Concepedia

Pangenome Transcriptomics

Pangenome Transcriptomics is a transcriptomic analysis framework that integrates gene expression data across the entire pangenome of a species, encompassing both core and accessory genes, to systematically characterize transcriptional variation associated with genomic diversity.

14

Publications

1.3K

Citations

212

Authors

80

Institutions

Publications per year

2017–2026

13

Parents

Publications

14

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates

Andrew Yates, James E. Allen, Ridwan Amode et al. · Nucleic Acids Research · 2021 · 447 citations · Full text

, , +16

Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

Clémence Plissonneau, Fanny E. Hartmann, Daniel Croll · BMC Biology · 2018 · 224 citations · Full text

, , +17

Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits

Yue Huang, Jiaxian He, Yuantao Xu et al. · Nature Genetics · 2023 · 163 citations

, , +15

Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species

Bruno Contreras‐Moreira, Carlos P. Cantalapiedra, María Jesús García-Pereira et al. · Frontiers in Plant Science · 2017 · 85 citations · Full text

, , +17

Haplotype-aware pantranscriptome analyses using spliced pangenome graphs

Jonas A. Sibbesen, Jordan M. Eizenga, Adam M. Novak et al. · Nature Methods · 2023 · 81 citations · Full text

, , +16

1–5 of 14

Authors

212

  1. XC
    Xian Chang

    University of California, Santa Cruz, United States

    2 publications · 99 citations

    2

    h-index

  2. EG
    Erik Garrison

    University of California, Santa Cruz, United States

    2 publications · 99 citations

    2

    h-index

  3. ÉC
    Élodie Caudal

    Centre National de la Recherche Scientifique, France

    2 publications · 64 citations

    2

    h-index

  4. AF
    Anne Friedrich

    Université de Strasbourg, France

    2 publications · 64 citations

    2

    h-index

  5. JS
    Jouni Sirén

    University of California, Santa Cruz, United States

    2 publications · 99 citations

    2

    h-index

1–5 of 212

Institutions

80

  1. Centre National de la Recherche Scientifique

    Paris, France

    3 h-index

    19 publications

    800 citations

  2. University of Tennessee Health Science Center

    Memphis, United States

    2 h-index

    2 publications

    99 citations

  3. University of California, Santa Cruz

    Santa Cruz, United States

    2 h-index

    12 publications

    594 citations

  4. Université de Strasbourg

    Strasbourg, France

    2 h-index

    18 publications

    576 citations

  5. Murdoch University

    Perth, Australia

    2 h-index

    11 publications

    516 citations

  6. Institut Universitaire de France

    Paris, France

    2 h-index

    2 publications

    64 citations

  7. Rothamsted Research

    Harpenden, United Kingdom

    1 h-index

    4 publications

    1.8K citations

  8. Biologie et gestion des champignons phytopathogènes

    Palaiseau, France

    1 h-index

    1 publications

    224 citations

1–8 of 80

Venues

  1. Nature Genetics

    3 publications · 254 citations

    3

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 32 citations

    2

    h-index

  3. Agronomy

    1 publications · 18 citations

    1

    h-index

  4. BMC Biology

    1 publications · 224 citations

    1

    h-index

  5. Plant Communications

    1 publications · 54 citations

    1

    h-index

1–5