Concepedia

Pan-genome Alignment

Pan-Genome Alignment is a computational method in genomics that aligns sequencing reads or genomic sequences to a pan-genome reference structure, which encompasses the full repertoire of genomic sequences from a species or clade, thereby capturing both core and accessory genetic elements.

38

Publications

3.3K

Citations

365

Authors

139

Institutions

Publications per year

2017–2026

25

Variants

Pangenome Alignment

Parents

Publications

38

Assembly of a pan-genome from deep sequencing of 910 humans of African descent

Rachel M. Sherman, Juliet Forman, Valentin Antonescu et al. · Nature Genetics · 2018 · 417 citations · Full text

, , +17

GraphAligner: rapid and versatile sequence-to-graph alignment

Mikko Rautiainen, Tobias Marschall · Genome biology · 2020 · 277 citations · Full text

, , +16

NCBI BLAST+ integrated into Galaxy

Peter Cock, John Chilton, Björn Grüning et al. · GigaScience · 2015 · 271 citations · Full text

, , +13

Building the sequence map of the human pan-genome

Ruiqiang Li, Yingrui Li, Hancheng Zheng et al. · Nature Biotechnology · 2009 · 269 citations

, , +13

High-resolution genetic mapping of maize pan-genome sequence anchors

Fei Lü, Jeffrey C. Glaubitz, Peter J. Bradbury et al. · Nature Communications · 2015 · 239 citations · Full text

, , +17

1–5 of 38

Authors

365

  1. TM
    Tobias Marschall

    Heinrich Heine University Düsseldorf, Germany

    3 publications · 316 citations

    3

    h-index

  2. MR
    Mikko Rautiainen

    University of California, Santa Cruz, United States

    2 publications · 298 citations

    2

    h-index

  3. NS
    Nicola Soranzo

    Earlham Institute, United Kingdom

    2 publications · 293 citations

    2

    h-index

  4. PC
    Peter Cock

    James Hutton Institute, United Kingdom

    2 publications · 293 citations

    2

    h-index

  5. JC
    John Chilton

    Pennsylvania State University, United States

    2 publications · 293 citations

    2

    h-index

1–5 of 365

Institutions

139

  1. Chinese Academy of Agricultural Sciences

    Beijing, China

    4 h-index

    17 publications

    2.6K citations

  2. China Agricultural University

    Beijing, China

    3 h-index

    13 publications

    893 citations

  3. Max Planck Institute for Informatics

    Saarbrücken, Germany

    3 h-index

    5 publications

    355 citations

  4. Saarland University

    Saarbrücken, Germany

    3 h-index

    5 publications

    355 citations

  5. Institute of Crop Sciences

    Beijing, China

    3 h-index

    16 publications

    2.6K citations

  6. BGI Group (China)

    Shenzhen, China

    2 h-index

    27 publications

    7.2K citations

  7. University of Freiburg

    Freiburg im Breisgau, Germany

    2 h-index

    2 publications

    293 citations

  8. Universidade Federal de Minas Gerais

    Belo Horizonte, Brazil

    2 h-index

    19 publications

    357 citations

1–8 of 139

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 5 publications · 77 citations

    5

    h-index

  2. Bioinformatics

    2 publications · 41 citations

    2

    h-index

  3. BMC Genomics

    2 publications · 254 citations

    2

    h-index

  4. Nucleic Acids Research

    2 publications · 185 citations

    2

    h-index

  5. Molecular Genetics and Genomics

    2 publications · 56 citations

    2

    h-index

1–5