Concepedia

Otu Table Construction

OTU Table Construction is a computational method in microbial ecology that organizes sequence data into a matrix format by clustering sequences into operational taxonomic units and tabulating their abundance across samples, thereby enabling downstream diversity and statistical analyses.

17

Publications

21.2K

Citations

119

Authors

74

Institutions

Publications per year

2017–2026

12

Parents

Publications

17

UPARSE: highly accurate OTU sequences from microbial amplicon reads

R. C. Edgar · Nature Methods · 2013 · 17.3K citations

, , +14

FROGS: Find, Rapidly, OTUs with Galaxy Solution

Fréderic Escudié, Lucas Auer, Maria Bernard et al. · Bioinformatics · 2017 · 998 citations · Full text

, , +17

Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

Tobias Guldberg Frøslev, Rasmus Kjøller, Hans Henrik Bruun et al. · Nature Communications · 2017 · 870 citations · Full text

, , +17

ampvis2: an R package to analyse and visualise 16S rRNA amplicon data

Kasper Skytte Andersen, Rasmus Hansen Kirkegaard, Søren Michael Karst et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2018 · 762 citations · Full text

, , +14

Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons

Ilias Lagkouvardos, Sandra E. Fischer, Neeraj Kumar et al. · PeerJ · 2017 · 465 citations · Full text

, , +14

1–5 of 17

Authors

119

  1. RC
    R. C. Edgar

    University of California, Berkeley, United States

    2 publications · 17.3K citations

    2

    h-index

  2. EP
    Elise Pendall

    Western Sydney University, Australia

    1 publications · 246 citations

    1

    h-index

  3. IS
    Ian Snape

    Australian Antarctic Division, Australia

    1 publications · 246 citations

    1

    h-index

  4. PG
    Patrick Gasqui

    Centre National de la Recherche Scientifique, France

    1 publications · 25 citations

    1

    h-index

  5. LA
    Lucas Auer

    Centre National de la Recherche Scientifique, France

    1 publications · 998 citations

    1

    h-index

1–5 of 119

Institutions

74

  1. Tiburon Associates (United States)

    Grand Rapids, United States

    2 h-index

    2 publications

    17.3K citations

  2. Duke Medical Center

    Durham, United States

    1 h-index

    1 publications

    14 citations

  3. South China Institute Of Environmental Sciences

    Guangzhou, China

    1 h-index

    2 publications

    30 citations

  4. The University of Texas MD Anderson Cancer Center

    Houston, United States

    1 h-index

    5 publications

    80 citations

  5. Department of Primary Industries

    Brisbane, Australia

    1 h-index

    1 publications

    246 citations

  6. Science for Life Laboratory

    Stockholm, Sweden

    1 h-index

    6 publications

    258 citations

  7. Vlaams Instituut voor Biotechnologie

    Ghent, Belgium

    1 h-index

    2 publications

    624 citations

  8. Max Delbrück Center

    Berlin, Germany

    1 h-index

    1 publications

    312 citations

1–8 of 74

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 863 citations

    3

    h-index

  2. 2

    h-index

  3. Frontiers in Microbiology

    2 publications · 31 citations

    2

    h-index

  4. GigaScience

    1 publications · 246 citations

    1

    h-index

  5. Infection Genetics and Evolution

    1 publications · 19 citations

    1

    h-index

1–5