Søren Michael Karst

ampvis2: an R package to analyse and visualise 16S rRNA amplicon data

Kasper Skytte Andersen, Rasmus Hansen Kirkegaard, Søren Michael Karst et al. · 2018 · 730 citations · Full text

Engineering, Molecular Biology, Genomics +25

Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities

Mads Albertsen, Søren Michael Karst, Anja Ziegler et al. · PLoS ONE · 2015 · 553 citations · Full text

Greengenes2 unifies microbial data in a single reference tree

Daniel McDonald, Yueyu Jiang, Metin Balaban et al. · Nature Biotechnology · 2023 · 485 citations · Full text

Oxford Nanopore R10.4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing

Mantas Sereika, Rasmus Hansen Kirkegaard, Søren Michael Karst et al. · Nature Methods · 2022 · 472 citations · Full text

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

Søren Michael Karst, Ryan Ziels, Rasmus Hansen Kirkegaard et al. · Nature Methods · 2021 · 436 citations · Full text

Long-read Sequencing, Functional Genomics, Medicine +13