Søren Michael Karst

ampvis2: an R package to analyse and visualise 16S rRNA amplicon data

Kasper Skytte Andersen, Rasmus Hansen Kirkegaard, Søren Michael Karst et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2018 · 762 citations · Full text

Life Sciences, Ecology, Microbiology +14

Greengenes2 unifies microbial data in a single reference tree

Daniel McDonald, Yueyu Jiang, Metin Balaban et al. · Nature Biotechnology · 2023 · 603 citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities

Mads Albertsen, Søren Michael Karst, Anja Ziegler et al. · PLoS ONE · 2015 · 563 citations · Full text

Life Sciences, Microbiology, Environmental Microbiology +16

Oxford Nanopore R10.4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing

Mantas Sereika, Rasmus Hansen Kirkegaard, Søren Michael Karst et al. · Nature Methods · 2022 · 506 citations · Full text

Life Sciences, Genetics, Microbiology +14

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

Søren Michael Karst, Ryan Ziels, Rasmus Hansen Kirkegaard et al. · Nature Methods · 2021 · 457 citations · Full text

Life Sciences, Biotechnology, Molecular Biology +11