Concepedia

Optical Map Validation

Optical Map Validation is a computational method used in genome assembly assessment that distinguishes itself by aligning experimentally derived optical maps—long-range restriction enzyme or labeling patterns of single DNA molecules—against in silico predicted maps from assembled sequences to verify structural accuracy and detect large-scale assembly errors.

25

Publications

4.5K

Citations

236

Authors

69

Institutions

Publications per year

2017–2026

12

Parents

Publications

25

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

Yoshihiro Kawahara, M. de la Bastide, John P. Hamilton et al. · Rice · 2013 · 2.5K citations · Full text

, , +17

Optical maps refine the bread wheat <i>Triticum aestivum</i> cv. Chinese Spring genome assembly

Tingting Zhu, Le Wang, Hélène Rimbert et al. · The Plant Journal · 2021 · 587 citations · Full text

, , +14

A complete assembly of the rice Nipponbare reference genome

Lianguang Shang, Wenchuang He, Tianyi Wang et al. · Molecular Plant · 2023 · 194 citations · Full text

, , +16

High-resolution human genome structure by single-molecule analysis

Brian Teague, Michael S. Waterman, Steven Goldstein et al. · Proceedings of the National Academy of Sciences · 2010 · 182 citations · Full text

, , +11

Scaffolding and validation of bacterial genome assemblies using optical restriction maps

Niranjan Nagarajan, Timothy D. Read, Mihai Pop · Bioinformatics · 2008 · 158 citations · Full text

, , +14

1–5 of 25

Authors

236

  1. DC
    David C. Schwartz

    University of Wisconsin–Madison, United States

    5 publications · 2.9K citations

    5

    h-index

  2. SZ
    Shiguo Zhou

    University of Wisconsin–Madison, United States

    4 publications · 2.9K citations

    4

    h-index

  3. TA
    Thomas Anantharaman

    New York University, United States

    4 publications · 181 citations

    4

    h-index

  4. DF
    Dan Forrest

    University of Wisconsin–Madison, United States

    3 publications · 373 citations

    3

    h-index

  5. CC
    Chris Churas

    University of Wisconsin–Madison, United States

    2 publications · 191 citations

    2

    h-index

1–5 of 236

Institutions

69

  1. University of Wisconsin–Madison

    Madison, United States

    6 h-index

    52 publications

    10.9K citations

  2. New York University

    New York, United States

    3 h-index

    7 publications

    515 citations

  3. University of California, Davis

    Davis, United States

    3 h-index

    9 publications

    3.7K citations

  4. BioNano Genomics (United States)

    San Diego, United States

    2 h-index

    14 publications

    306 citations

  5. Rutgers, The State University of New Jersey

    New Brunswick, United States

    2 h-index

    8 publications

    472 citations

  6. University of Iowa

    Iowa City, United States

    2 h-index

    9 publications

    550 citations

  7. Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)

    Gatersleben, Germany

    2 h-index

    3 publications

    755 citations

  8. Hammersmith Hospital

    London, United Kingdom

    2 h-index

    3 publications

    232 citations

1–8 of 69

Venues

  1. Bioinformatics

    3 publications · 196 citations

    3

    h-index

  2. The Plant Journal

    3 publications · 747 citations

    3

    h-index

  3. BMJ

    2 publications · 156 citations

    2

    h-index

  4. Proceedings of the National Academy of Sciences

    PNAS · 2 publications · 226 citations

    2

    h-index

  5. Applied and Environmental Microbiology

    AEM · 1 publications · 69 citations

    1

    h-index

1–5