Concepedia

Open-reference Clustering

Open-Reference Clustering is a computational method for delineating Operational Taxonomic Units that clusters sequencing reads both against a reference database and de novo, thereby integrating existing taxonomic knowledge with the discovery of novel microbial diversity.

3

Publications

793

Citations

30

Authors

13

Institutions

Publications per year

2017–2026

1

Parents

Publications

3

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

Jai Ram Rideout, Yan He, José A. Navas-Molina et al. · PeerJ · 2014 · 578 citations · Full text

, , +17

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

Yan He, J. Gregory Caporaso, Xiaotao Jiang et al. · Microbiome · 2015 · 185 citations · Full text

, , +15

ReClustOR: a re‐clustering tool using an open‐reference method that improves operational taxonomic unit definition

Sébastien Terrat, Christophe Djemiel, Corentin Journay et al. · Methods in Ecology and Evolution · 2019 · 30 citations · Full text

, , +15

1–3 of 3

Authors

30

  1. RK
    Rob Knight

    University of California San Diego, United States

    2 publications · 763 citations

    2

    h-index

  2. WA
    William A. Walters

    Howard Hughes Medical Institute, United States

    2 publications · 763 citations

    2

    h-index

  3. JR
    Jai Ram Rideout

    Northern Arizona University, United States

    2 publications · 763 citations

    2

    h-index

  4. SM
    Susan M. Huse

    Marine Biological Laboratory, United States

    2 publications · 763 citations

    2

    h-index

  5. YH
    Yan He

    Southern Medical University, China

    2 publications · 763 citations

    2

    h-index

1–5 of 30

Institutions

13

  1. Southern Medical University

    Guangzhou, China

    2 h-index

    6 publications

    1.9K citations

  2. Northern Arizona University

    Flagstaff, United States

    2 h-index

    5 publications

    2.1K citations

  3. Brown University

    Providence, United States

    2 h-index

    2 publications

    763 citations

  4. Icahn School of Medicine at Mount Sinai

    New York, United States

    1 h-index

    2 publications

    1.2K citations

  5. University of California San Diego

    San Diego, United States

    1 h-index

    2 publications

    370 citations

  6. Cornell University

    Ithaca, United States

    1 h-index

    1 publications

    185 citations

  7. Institut Agro Dijon

    Dijon, France

    1 h-index

    9 publications

    270 citations

  8. Howard Hughes Medical Institute

    Chevy Chase, United States

    1 h-index

    1 publications

    578 citations

1–8 of 13

Venues

  1. PeerJ

    1 publications · 578 citations

    1

    h-index

  2. Microbiome

    1 publications · 185 citations

    1

    h-index

  3. Methods in Ecology and Evolution

    1 publications · 30 citations

    1

    h-index

1–3