jvenn: an interactive Venn diagram viewer

Philippe Bardou, Jérôme Mariette, Fréderic Escudié, +2

BMC Bioinformatics

Characterization of Bacterial and Fungal Community Dynamics by High-Throughput Sequencing (HTS) Metabarcoding during Flax Dew-Retting

Christophe Djemiel, Sébastien Grec, Simon Hawkins

Frontiers in Microbiology

Flax StemsPlant SamplesFungal Community DynamicsMicrobial EvolutionPhylogenetic Analysis +15

Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids

Ugo Cenci, Shannon J. Sibbald, Bruce A. Curtis, +10

BMC Biology

Multimodal assessment of flax dew retting and its functional impact on fibers and natural fiber composites

Brigitte Chabbert, Justine Padovani, Christophe Djemiel, +7

Industrial Crops and Products

Fiber ReinforcementFlax Dew RettingMechanical EngineeringWood FibreNatural Fiber Composites +3

Urban land uses shape soil microbial abundance and diversity

Amélie Christel, Samuel Dequiedt, Nicolas Chemidlin Prévost‐Bouré, +10

The Science of The Total Environment

µgreen-db: a reference database for the 23S rRNA gene of eukaryotic plastids and cyanobacteria

Christophe Djemiel, Damien Plassard, Sébastien Terrat, +7

Scientific Reports

Biogeography of soil microbial habitats across France

Battle Karimi, Jean Villerd, Samuel Dequiedt, +13

Global Ecology and Biogeography

Soil DnaMicrobial DiversityBiodiversityEngineeringMolecular Ecology +12

BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons

Christophe Djemiel, Samuel Dequiedt, Battle Karimi, +10

BMC Bioinformatics

ReClustOR: a re‐clustering tool using an open‐reference method that improves operational taxonomic unit definition

Sébastien Terrat, Christophe Djemiel, Corentin Journay, +6

Methods in Ecology and Evolution

TaxonomyGenomicsOtu StabilityDna BarcodingHigh Throughput Sequencing +23

Biogeographical patterns of the soil fungal:bacterial ratio across France

Christophe Djemiel, Samuel Dequiedt, Arthur Bailly, +10

mSphere

Fungal DiversityBiogeochemistryEngineeringSoil EcologySoil Functioning +10