Concepedia

Nucleosome Positioning Models

Nucleosome Positioning Models is a computational framework that predicts the precise genomic locations of nucleosomes by integrating DNA sequence features, thermodynamic stability, and chromatin context to determine energetically favorable nucleosome arrangements along chromatin.

117

Publications

9.1K

Citations

418

Authors

198

Institutions

Publications per year

2017–2026

25

Parents

Publications

117

A genomic code for nucleosome positioning

Eran Segal, Yvonne Fondufe‐Mittendorf, Lingyi Chen et al. · Nature · 2006 · 1.5K citations · Full text

, , +14

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

Travis N. Mavrich, Ilya Ioshikhes, Bryan J. Venters et al. · Genome Research · 2008 · 678 citations · Full text

, , +17

Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences

A. Thåström, Peggy T. Lowary, Hans R. Widlund et al. · Journal of Molecular Biology · 1999 · 391 citations

, , +14

Nucleosome positions predicted through comparative genomics

Ilya Ioshikhes, István Albert, Sara J. Zanton et al. · Nature Genetics · 2006 · 328 citations

, , +14

Bending and curvature calculations in B-DNA

David S. Goodsell, Richard E. Dickerson · Nucleic Acids Research · 1994 · 309 citations · Full text

, , +13

1–5 of 117

Authors

418

  1. JW
    Jonathan Widom

    Northwestern University, United States

    9 publications · 2.6K citations

    9

    h-index

  2. VB
    Victor B. Zhurkin

    National Cancer Institute, United States

    4 publications · 165 citations

    4

    h-index

  3. PD
    Pasquale De Santis

    Sapienza University of Rome, Italy

    3 publications · 69 citations

    3

    h-index

  4. SL
    Shuai Liu

    Hunan Normal University, China

    3 publications · 137 citations

    3

    h-index

  5. ML
    Mengye Lu

    Inner Mongolia University, China

    3 publications · 137 citations

    3

    h-index

1–5 of 418

Institutions

198

  1. Northwestern University

    Evanston, United States

    9 h-index

    26 publications

    12K citations

  2. Harvard University

    Cambridge, United States

    7 h-index

    12 publications

    984 citations

  3. Leiden University

    Leiden, The Netherlands

    7 h-index

    15 publications

    701 citations

  4. Sapienza University of Rome

    Rome, Italy

    6 h-index

    23 publications

    525 citations

  5. The Ohio State University

    Columbus, United States

    5 h-index

    14 publications

    1.5K citations

  6. Inner Mongolia University

    Hohhot, China

    5 h-index

    13 publications

    690 citations

  7. Pennsylvania State University

    State College, United States

    5 h-index

    16 publications

    6.6K citations

  8. Howard Hughes Medical Institute

    Chevy Chase, United States

    5 h-index

    13 publications

    1.1K citations

1–8 of 198

Venues

  1. Nucleic Acids Research

    10 publications · 1K citations

    10

    h-index

  2. Bioinformatics

    9 publications · 294 citations

    9

    h-index

  3. Journal of Biomolecular Structure and Dynamics

    9 publications · 224 citations

    9

    h-index

  4. PLoS Computational Biology

    8 publications · 554 citations

    8

    h-index

  5. Proceedings of the National Academy of Sciences

    PNAS · 6 publications · 440 citations

    6

    h-index

1–5