Concepedia

Microbial Single-cell Assembly

Microbial Single-Cell Assembly is a computational method for reconstructing complete microbial genomes from individual cells through the sequencing and assembly of amplified genomic material, enabling the study of uncultivated microorganisms at single-cell resolution.

14

Publications

29.7K

Citations

100

Authors

38

Institutions

Publications per year

2017–2026

9

Parents

Publications

14

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 27.2K citations

, , +17

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

Sergey Nurk, Anton Bankevich, Dmitry Antipov et al. · Journal of Computational Biology · 2013 · 1.4K citations · Full text

, , +17

<scp>hybrid</scp>SPA<scp>des</scp>: an algorithm for hybrid assembly of short and long reads

Dmitry Antipov, Anton Korobeynikov, Jeffrey S. McLean et al. · Bioinformatics · 2015 · 703 citations · Full text

, , +16

Complete biosynthesis of a sulfated chondroitin in Escherichia coli

Abinaya Badri, Asher Williams, Adeola E. Awofiranye et al. · Nature Communications · 2021 · 88 citations · Full text

, , +15

Microplastics drive microbial assembly, their interactions, and metagenomic functions in two soils with distinct pH and heavy metal availability

Jun Meng, Wenjin Li, Chengmei Diao et al. · Journal of Hazardous Materials · 2023 · 69 citations

, , +17

1–5 of 14

Authors

100

  1. DA
    Dmitry Antipov

    St Petersburg University, Russia

    3 publications · 29.3K citations

    3

    h-index

  2. PA
    Pavel A. Pevzner

    University of California San Diego, United States

    3 publications · 29.3K citations

    3

    h-index

  3. AS
    Alexander Sirotkin

    Steklov Mathematical Institute, Russia

    2 publications · 28.6K citations

    2

    h-index

  4. GT
    Glenn Tesler

    University of California San Diego, United States

    2 publications · 28.6K citations

    2

    h-index

  5. AK
    Anton Korobeynikov

    St Petersburg University, Russia

    2 publications · 2.1K citations

    2

    h-index

1–5 of 100

Institutions

38

  1. University of California San Diego

    San Diego, United States

    3 h-index

    6 publications

    85K citations

  2. University of South Carolina

    Columbia, United States

    2 h-index

    2 publications

    28.6K citations

  3. Sun Yat-sen University

    Guangzhou, China

    2 h-index

    3 publications

    156 citations

  4. Saint Petersburg Academic University

    Saint Petersburg, Russia

    2 h-index

    25 publications

    395.8K citations

  5. St Petersburg University

    Saint Petersburg, Russia

    2 h-index

    3 publications

    3.5K citations

  6. The First Affiliated Hospital, Sun Yat-sen University

    Guangzhou, China

    1 h-index

    1 publications

    18 citations

  7. Nanjing Agricultural University

    Nanjing, China

    1 h-index

    9 publications

    261 citations

  8. University of Washington

    Seattle, United States

    1 h-index

    1 publications

    703 citations

1–8 of 38

Venues

  1. Journal of Computational Biology

    2 publications · 28.6K citations

    2

    h-index

  2. Sensors and Actuators B Chemical

    1 publications · 18 citations

    1

    h-index

  3. Bioinformatics

    1 publications · 703 citations

    1

    h-index

  4. Cell

    1 publications · 30 citations

    1

    h-index

  5. Nature Communications

    1 publications · 88 citations

    1

    h-index

1–5