Concepedia

Matrix Benchmarking

Matrix Benchmarking is a methodological framework within bioinformatics that systematically evaluates the performance of substitution matrices by comparing their effectiveness in sequence alignment tasks against standardized biological datasets and established metrics.

6

Publications

283

Citations

21

Authors

14

Institutions

Publications per year

2017–2026

0

Parents

Publications

6

Revising the concept and forms of benchmarking

Paula Kyrö · Benchmarking An International Journal · 2003 · 134 citations

, , +8

Theoretical and empirical quality assessment of transcription factor-binding motifs

Alejandra Medina-Rivera, Cei Abreu‐Goodger, Morgane Thomas‐Chollier et al. · Nucleic Acids Research · 2010 · 73 citations · Full text

, , +14

A benchmark for statistical microarray data analysis that preserves actual biological and technical variance

Benoît De Hertogh, Bertrand De Meulder, Fabrice Berger et al. · BMC Bioinformatics · 2010 · 25 citations · Full text

, , +12

Addressing inaccuracies in BLOSUM computation improves homology search performance

Frank Keul, Michael Goesele, Kay Hamacher · BMC Bioinformatics · 2016 · 23 citations · Full text

, , +16

Orthology inference at scale with FastOMA

Sina Majidian, Yannis Nevers, Ali Yazdizadeh Kharrazi et al. · Nature Methods · 2025 · 18 citations · Full text

, , +13

1–5 of 6

Authors

21

  1. HS
    Heladia Salgado

    Universidad Nacional Autónoma de México, Mexico

    1 publications · 73 citations

    1

    h-index

  2. MG
    Michael Goesele

    Technische Universität Darmstadt, Germany

    1 publications · 23 citations

    1

    h-index

  3. ZW
    Zhiping Weng

    University of Massachusetts Chan Medical School, United States

    1 publications · 12 citations

    1

    h-index

  4. BD
    Bertrand De Meulder

    University of Amsterdam, Netherlands

    1 publications · 25 citations

    1

    h-index

  5. VG
    V. Gil

    Universitat Autònoma de Barcelona, Spain

    1 publications · 16 citations

    1

    h-index

1–5 of 21

Institutions

14

  1. University of Namur

    Namur, Belgium

    1 h-index

    7 publications

    175 citations

  2. Universitat Politècnica de Catalunya

    Barcelona, Spain

    1 h-index

    2 publications

    32 citations

  3. Technische Universität Darmstadt

    Darmstadt, Germany

    1 h-index

    3 publications

    69 citations

  4. Bioinformatics Institute

    Saint Petersburg, Russia

    1 h-index

    5 publications

    365 citations

  5. Institució Catalana de Recerca i Estudis Avançats

    Barcelona, Spain

    1 h-index

    2 publications

    32 citations

  6. Boston University

    Boston, United States

    1 h-index

    1 publications

    12 citations

  7. Universidad Nacional Autónoma de México

    Mexico City, Mexico

    1 h-index

    6 publications

    438 citations

  8. Universidad Autónoma del Estado de Morelos

    Cuernavaca, Mexico

    1 h-index

    6 publications

    438 citations

1–8 of 14

Venues

  1. BMC Bioinformatics

    2 publications · 48 citations

    2

    h-index

  2. PubMed

    Repository · 1 publications · 12 citations

    1

    h-index

  3. Nucleic Acids Research

    1 publications · 73 citations

    1

    h-index

  4. Benchmarking An International Journal

    1 publications · 134 citations

    1

    h-index

  5. Bioinformatics

    1 publications · 16 citations

    1

    h-index

1–5