Concepedia

Marker Gene Annotation

Marker Gene Annotation is a computational method in metagenomic annotation that identifies and classifies taxonomically informative genes, such as 16S rRNA or single-copy housekeeping genes, to infer microbial community composition and evolutionary relationships from environmental sequencing data.

16

Publications

605

Citations

97

Authors

56

Institutions

Publications per year

2017–2026

10

Parents

Publications

16

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes

Anthony Fullam, Ivica Letunić, Thomas Schmidt et al. · Nucleic Acids Research · 2022 · 83 citations · Full text

, , +15

NINJA-OPS: Fast Accurate Marker Gene Alignment Using Concatenated Ribosomes

Gabriel A. Al‐Ghalith, Emmanuel Montassier, Henry N. Ward et al. · PLoS Computational Biology · 2016 · 82 citations · Full text

, , +17

Tax4Fun2: a R-based tool for the rapid prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene marker gene sequences

Franziska Wemheuer, Jessica A. Taylor, Rolf Daniel et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2018 · 68 citations · Full text

, , +15

Sequence-tagged-site (STS) markers of arbitrary genes: the utility of black spruce-derived STS primers in other conifers

Daniel J. Perry, Jean Bousquet · Theoretical and Applied Genetics · 1998 · 53 citations

, , +11

De novo assembly of the transcriptome of Neottopteris nidus using Illumina paired-end sequencing and development of EST-SSR markers

Xinping Jia, Yanming Deng, Xiaobo Sun et al. · Molecular Breeding · 2016 · 46 citations

, , +12

1–5 of 16

Authors

97

  1. RK
    Rob Knight

    University of California San Diego, United States

    2 publications · 56 citations

    2

    h-index

  2. JB
    Jean Bousquet

    Université Laval, Canada

    2 publications · 74 citations

    2

    h-index

  3. MR
    Matthew R. Dillon

    Northern Arizona University, United States

    2 publications · 56 citations

    2

    h-index

  4. JR
    Jai Ram Rideout

    Northern Arizona University, United States

    2 publications · 56 citations

    2

    h-index

  5. NA
    Nicholas A. Bokulich

    Northern Arizona University, United States

    2 publications · 56 citations

    2

    h-index

1–5 of 97

Institutions

56

  1. University of California San Diego

    San Diego, United States

    3 h-index

    3 publications

    76 citations

  2. Northern Arizona University

    Flagstaff, United States

    2 h-index

    10 publications

    280 citations

  3. Australian National University

    Canberra, Australia

    2 h-index

    4 publications

    112 citations

  4. Université Laval

    Québec, Canada

    2 h-index

    4 publications

    148 citations

  5. Institute of Botany

    Beijing, China

    1 h-index

    1 publications

    45 citations

  6. Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria

    Madrid, Spain

    1 h-index

    2 publications

    166 citations

  7. Chinese Academy of Agricultural Sciences

    Beijing, China

    1 h-index

    1 publications

    16 citations

  8. Jiangsu Academy of Agricultural Sciences

    Nanjing, China

    1 h-index

    5 publications

    230 citations

1–8 of 56

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 4 publications · 131 citations

    4

    h-index

  2. Molecular Breeding

    2 publications · 62 citations

    2

    h-index

  3. Heredity

    1 publications · 21 citations

    1

    h-index

  4. Food Chemistry

    1 publications · 20 citations

    1

    h-index

  5. Theoretical and Applied Genetics

    1 publications · 53 citations

    1

    h-index

1–5