Concepedia

Loop Sampling

Loop Sampling is a computational method in structural biology that generates plausible conformations of protein loops by exploring the conformational space of loop regions anchored to fixed secondary structural elements, distinguished from other sampling techniques by its focus on geometrically and energetically viable loop configurations in macromolecular modeling.

35

Publications

1K

Citations

120

Authors

77

Institutions

Publications per year

2017–2026

10

Parents

Publications

35

Simple, yet powerful methodologies for conformational sampling of proteins

Ryuhei Harada, Yu Takano, Takeshi Baba et al. · Physical Chemistry Chemical Physics · 2015 · 65 citations

, , +17

Fast Protein Loop Sampling and Structure Prediction Using Distance-Guided Sequential Chain-Growth Monte Carlo Method

Ke Tang, Jinfeng Zhang, Jie Liang · PLoS Computational Biology · 2014 · 59 citations · Full text

, , +15

Structural diversification during glucosinolate breakdown: mechanisms of thiocyanate, epithionitrile and simple nitrile formation

Daniela Eisenschmidt‐Bönn, Nicola Schneegans, Anita Backenköhler et al. · The Plant Journal · 2019 · 47 citations · Full text

, , +15

Exploring the Dynamics of Propeller Loops in Human Telomeric DNA Quadruplexes Using Atomistic Simulations

Barira Islam, Petr Stadlbauer, Alejandro Gil-Ley et al. · Journal of Chemical Theory and Computation · 2017 · 47 citations · Full text

, , +17

Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops

Peggy Yao, Ankur Dhanik, Nathan Marz et al. · IEEE/ACM Transactions on Computational Biology and Bioinformatics · 2008 · 46 citations · Full text

, , +17

1–5 of 35

Authors

120

  1. GR
    Gyu Rie Lee

    University of Washington, United States

    2 publications · 27 citations

    2

    h-index

  2. JL
    Jie Liang

    University of Illinois Chicago, United States

    2 publications · 73 citations

    2

    h-index

  3. SW
    Samuel W. K. Wong

    University of Waterloo, Canada

    2 publications · 26 citations

    2

    h-index

  4. HP
    Hahnbeom Park

    University of Washington, United States

    2 publications · 27 citations

    2

    h-index

  5. CS
    Chaok Seok

    Seoul National University, South Korea

    2 publications · 27 citations

    2

    h-index

1–5 of 120

Institutions

77

  1. The University of Osaka

    Osaka, Japan

    3 h-index

    6 publications

    224 citations

  2. Indiana University School of Medicine

    Indianapolis, United States

    2 h-index

    3 publications

    99 citations

  3. Florida State University

    Tallahassee, United States

    2 h-index

    2 publications

    73 citations

  4. University of California, San Francisco

    San Francisco, United States

    2 h-index

    5 publications

    146 citations

  5. University of Florida

    Gainesville, United States

    2 h-index

    2 publications

    26 citations

  6. Indiana University – Purdue University Indianapolis

    Indianapolis, United States

    2 h-index

    3 publications

    99 citations

  7. University of Nebraska–Lincoln

    Lincoln, United States

    2 h-index

    2 publications

    56 citations

  8. Stanford University

    Stanford, United States

    2 h-index

    10 publications

    435 citations

1–8 of 77

Venues

  1. Bioinformatics

    4 publications · 108 citations

    4

    h-index

  2. Journal of Computational Chemistry

    3 publications · 110 citations

    3

    h-index

  3. 3

    h-index

  4. Journal of Chemical Theory and Computation

    JCTC · 3 publications · 90 citations

    3

    h-index

  5. Journal of Chemical Information and Modeling

    JCIM · 2 publications · 32 citations

    2

    h-index

1–5