Petr Stadlbauer

Reference Simulations of Noncanonical Nucleic Acids with Different χ Variants of the AMBER Force Field: Quadruplex DNA, Quadruplex RNA, and Z-DNA

Miroslav Krepl, Marie Zgarbová, Petr Stadlbauer et al. · Journal of Chemical Theory and Computation · 2012 · 244 citations · Full text

Molecular Dynamics Simulations of Nucleic Acids. From Tetranucleotides to the Ribosome

Pavel Banáš, Petr Jurečka, Marie Zgarbová et al. · The Journal of Physical Chemistry Letters · 2014 · 164 citations

From Tetranucleotides, Engineering, Limited Time Scale +16

Structural dynamics of possible late-stage intermediates in folding of quadruplex DNA studied by molecular simulations

Petr Stadlbauer, Miroslav Krepl, Thomas E. Cheatham et al. · Nucleic Acids Research · 2013 · 115 citations · Full text

Quadruplex Dna, Strand Slippage, Dna +18

Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations

Petr Stadlbauer, Lukáš Trantı́rek, Thomas E. Cheatham et al. · Biochimie · 2014 · 80 citations · Full text

Biophysical Modeling, Human Telomeric Quadruplexes, Molecular Biology +17

Can We Execute Stable Microsecond-Scale Atomistic Simulations of Protein–RNA Complexes?

Miroslav Krepl, Marek Havrila, Petr Stadlbauer et al. · Journal of Chemical Theory and Computation · 2015 · 72 citations