Concepedia

Long-read Transcriptome Assembly

Long-Read Transcriptume Assembly is a transcriptome reconstruction methodology that specifically leverages long-read sequencing technologies to generate contiguous and full-length transcript sequences, distinguishing itself from short-read approaches by enabling more accurate resolution of complex genomic regions, alternative splicing events, and gene isoforms.

28

Publications

3.7K

Citations

260

Authors

110

Institutions

Publications per year

2017–2026

22

Parents

Publications

28

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

Sam Kovaka, Aleksey V. Zimin, Geo Pertea et al. · Genome biology · 2019 · 2.1K citations · Full text

, , +17

Improved transcriptome assembly using a hybrid of long and short reads with StringTie

Alaina Shumate, Brandon Wong, Geo Pertea et al. · PLoS Computational Biology · 2022 · 480 citations · Full text

, , +17

Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm

Stephen R. Doyle, Alan Tracey, Roz Laing et al. · Communications Biology · 2020 · 167 citations · Full text

, , +16

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

Sam Kovaka, Aleksey V. Zimin, Geo Pertea et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2019 · 109 citations · Full text

, , +17

RNA-Seq Assembly – Are We There Yet?

Simon Schliesky, Udo Gowik, Andreas P.M. Weber et al. · Frontiers in Plant Science · 2012 · 97 citations · Full text

, , +15

1–5 of 28

Authors

260

  1. GP
    Geo Pertea

    Johns Hopkins University, United States

    4 publications · 2.7K citations

    4

    h-index

  2. MP
    Mihaela Pertea

    Johns Hopkins University, United States

    4 publications · 2.7K citations

    4

    h-index

  3. SK
    Sam Kovaka

    Johns Hopkins University, United States

    3 publications · 2.3K citations

    3

    h-index

  4. GF
    Gregory F. Ball

    Johns Hopkins University, United States

    2 publications · 35 citations

    2

    h-index

  5. KL
    Katherine L. Buchanan

    Deakin University, Australia

    2 publications · 35 citations

    2

    h-index

1–5 of 260

Institutions

110

  1. Johns Hopkins University

    Baltimore, United States

    5 h-index

    22 publications

    15.1K citations

  2. University of Edinburgh

    Edinburgh, United Kingdom

    3 h-index

    4 publications

    369 citations

  3. United States Department of Agriculture

    Washington, United States

    3 h-index

    3 publications

    89 citations

  4. Roslin Institute

    Dalkeith, United Kingdom

    2 h-index

    2 publications

    35 citations

  5. Deakin University

    Burwood, Australia

    2 h-index

    3 publications

    57 citations

  6. Carnegie Museum of Natural History

    Pittsburgh, United States

    2 h-index

    2 publications

    35 citations

  7. UNSW Sydney

    Sydney, Australia

    2 h-index

    9 publications

    162 citations

  8. The University of Queensland

    Brisbane, Australia

    2 h-index

    2 publications

    35 citations

1–8 of 110

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 137 citations

    3

    h-index

  2. G3 Genes Genomes Genetics

    3 publications · 93 citations

    3

    h-index

  3. BMC Genomics

    3 publications · 122 citations

    3

    h-index

  4. Communications Biology

    3 publications · 230 citations

    3

    h-index

  5. Genome biology

    2 publications · 2.1K citations

    2

    h-index

1–5