Concepedia

Log-odds Scoring Matrices

Log-Odds Scoring Matrices is a substitution matrix in bioinformatics that quantifies the likelihood of amino acid or nucleotide substitutions by expressing, in logarithmic form, the ratio of the observed frequency of a pairwise substitution to the expected frequency under a null model of random replacement.

9

Publications

482

Citations

32

Authors

19

Institutions

Publications per year

2017–2026

2

Parents

Publications

9

Epigenetic priors for identifying active transcription factor binding sites

Gabriel Cuéllar-Partida, Fabian A. Buske, Robert C. McLeay et al. · Bioinformatics · 2011 · 133 citations · Full text

, , +12

The compositional adjustment of amino acid substitution matrices

Yi‐Kuo Yu, John C. Wootton, Stephen F. Altschul · Proceedings of the National Academy of Sciences · 2003 · 94 citations · Full text

, , +12

A new substitution matrix for protein sequence searches based on contact frequencies in protein structures

Sanzo Miyazawa, Robert L. Jernigan · Protein Engineering Design and Selection · 1993 · 79 citations

, , +16

New scoring matrix for amino acid residue exchanges based on residue characteristic physical parameters

Jun Rao · International journal of peptide & protein research · 1987 · 55 citations

, , +12

Are binding residues conserved?

Christos Ouzounis, C Pérez-Irratxeta, Christian Sander et al. · PubMed · 1998 · 35 citations

, , +17

1–5 of 9

Authors

32

  1. AV
    Alfonso Valencia

    Spanish National Cancer Research Centre, Spain

    1 publications · 35 citations

    1

    h-index

  2. YY
    Yi‐Kuo Yu

    National Center for Biotechnology Information, United States

    1 publications · 94 citations

    1

    h-index

  3. RC
    Robert C. McLeay

    The University of Queensland, Australia

    1 publications · 133 citations

    1

    h-index

  4. JR
    Jun Rao

    First Affiliated Hospital of Zhengzhou University, China

    1 publications · 55 citations

    1

    h-index

  5. BP
    Byungkyu Park

    Inha University, South Korea

    1 publications · 22 citations

    1

    h-index

1–5 of 32

Institutions

19

  1. National Institutes of Health

    Bethesda, United States

    2 h-index

    4 publications

    361 citations

  2. Burnet Institute

    Melbourne, Australia

    1 h-index

    1 publications

    12 citations

  3. AIL Research (United States)

    Hopewell, United States

    1 h-index

    1 publications

    19 citations

  4. National Cancer Institute

    Bethesda, United States

    1 h-index

    1 publications

    79 citations

  5. Florida Atlantic University

    Boca Raton, United States

    1 h-index

    3 publications

    282 citations

  6. The University of Queensland

    Brisbane, Australia

    1 h-index

    6 publications

    798 citations

  7. Gunma University

    Maebashi, Japan

    1 h-index

    1 publications

    79 citations

  8. Bioanalytica (Switzerland)

    Lucerne, Switzerland

    1 h-index

    1 publications

    19 citations

1–8 of 19

Venues

  1. Proceedings of the National Academy of Sciences

    PNAS · 1 publications · 94 citations

    1

    h-index

  2. Bioinformatics

    1 publications · 133 citations

    1

    h-index

  3. Protein Engineering Design and Selection

    PEDS · 1 publications · 79 citations

    1

    h-index

  4. BMC Systems Biology

    1 publications · 22 citations

    1

    h-index

  5. PubMed

    Repository · 1 publications · 35 citations

    1

    h-index

1–5