Concepedia

Linked-read Haplotype Assembly

Linked-Read Haplotype Assembly is a haplotype-resolved genome assembly method that leverages barcoded short reads from linked-read sequencing technologies to partition and reconstruct haplotype-specific genomic regions by associating reads sharing common molecular barcodes with individual homologous chromosomes.

14

Publications

1.2K

Citations

195

Authors

57

Institutions

Publications per year

2017–2026

13

Parents

Publications

14

HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies

Peter Edge, Vineet Bafna, Vikas Bansal · Genome Research · 2016 · 466 citations · Full text

, , +17

Human-specific tandem repeat expansion and differential gene expression during primate evolution

Arvis Sulovari, Ruiyang Li, Peter A. Audano et al. · Proceedings of the National Academy of Sciences · 2019 · 158 citations · Full text

, , +17

Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information

Zhoutao Chen, Long Pham, Tsai-Chin Wu et al. · Genome Research · 2020 · 133 citations · Full text

, , +17

Haplotype tagging reveals parallel formation of hybrid races in two butterfly species

Joana I. Meier, Patricio A. Salazar, Marek Kučka et al. · Proceedings of the National Academy of Sciences · 2021 · 112 citations · Full text

, , +17

De novo human genome assemblies reveal spectrum of alternative haplotypes in diverse populations

K. Wong, Michal Levy‐Sakin, Pui–Yan Kwok · Nature Communications · 2018 · 101 citations · Full text

, , +12

1–5 of 14

Authors

195

  1. JI
    Joana I. Meier

    University of Cambridge, United Kingdom

    2 publications · 137 citations

    2

    h-index

  2. RW
    R. W. Davies

    University of Oxford, United Kingdom

    2 publications · 137 citations

    2

    h-index

  3. MK
    Marek Kučka

    Eunice Kennedy Shriver National Institute of Child Health and Human Development, United States

    2 publications · 137 citations

    2

    h-index

  4. PK
    Pui–Yan Kwok

    University of California, San Francisco, United States

    2 publications · 259 citations

    2

    h-index

  5. VB
    Vikas Bansal

    University of California San Diego, United States

    2 publications · 599 citations

    2

    h-index

1–5 of 195

Institutions

57

  1. University of Cambridge

    Cambridge, United Kingdom

    2 h-index

    8 publications

    548 citations

  2. University College London

    London, United Kingdom

    2 h-index

    2 publications

    137 citations

  3. Max Planck Society

    Munich, Germany

    2 h-index

    6 publications

    411 citations

  4. Stanford University

    Stanford, United States

    2 h-index

    7 publications

    113 citations

  5. University of Calgary

    Calgary, Canada

    2 h-index

    2 publications

    137 citations

  6. Friedrich Miescher Laboratory

    Tübingen, Germany

    2 h-index

    6 publications

    411 citations

  7. University of California San Diego

    San Diego, United States

    2 h-index

    9 publications

    2.2K citations

  8. University of Oxford

    Oxford, United Kingdom

    2 h-index

    2 publications

    137 citations

1–8 of 57

Venues

  1. Proceedings of the National Academy of Sciences

    PNAS · 2 publications · 270 citations

    2

    h-index

  2. Genome Research

    GR · 2 publications · 599 citations

    2

    h-index

  3. Nature Communications

    1 publications · 101 citations

    1

    h-index

  4. BMC Bioinformatics

    1 publications · 17 citations

    1

    h-index

  5. Bioinformatics Advances

    1 publications · 14 citations

    1

    h-index

1–5