Concepedia

K-mer Graph Construction

k-Mer Graph Construction is a computational method in sequence assembly that belongs to the class of graph-based genome reconstruction techniques, distinguished by its specific use of fixed-length nucleotide subsequences (k-mers) as nodes and their overlaps as directed edges to represent the topological structure of sequencing reads.

24

Publications

1.9K

Citations

145

Authors

87

Institutions

Publications per year

2017–2026

11

Parents

Publications

24

Exploiting sparseness in de novo genome assembly

Chengxi Ye, Zhanshan Sam, Charles H. Cannon et al. · BMC Bioinformatics · 2012 · 428 citations · Full text

, , +11

The khmer software package: enabling efficient nucleotide sequence analysis

Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad et al. · F1000Research · 2015 · 424 citations · Full text

, , +11

Bifrost: highly parallel construction and indexing of colored and compacted de Bruijn graphs

Guillaume Holley, Páll Melsted · Genome biology · 2020 · 207 citations · Full text

, , +9

Disk-based k-mer counting on a PC

Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Szymon Grabowski · BMC Bioinformatics · 2013 · 92 citations · Full text

, , +11

Unbiased pangenome graphs

Erik Garrison, Andrea Guarracino · Bioinformatics · 2022 · 85 citations · Full text

, , +15

1–5 of 24

Authors

145

  1. PP
    Prashant Pandey

    Stony Brook University, United States

    3 publications · 112 citations

    3

    h-index

  2. RP
    Rob Patro

    Stony Brook University, United States

    3 publications · 112 citations

    3

    h-index

  3. CB
    Christina Boucher

    University of Florida, United States

    2 publications · 27 citations

    2

    h-index

  4. EG
    Erik Garrison

    University of California, Santa Cruz, United States

    2 publications · 106 citations

    2

    h-index

  5. EM
    Eric McDonald

    Michigan State University, United States

    2 publications · 443 citations

    2

    h-index

1–5 of 145

Institutions

87

  1. Stony Brook University

    Stony Brook, United States

    3 h-index

    10 publications

    378 citations

  2. University of Maryland, College Park

    College Park, United States

    3 h-index

    3 publications

    893 citations

  3. Michigan State University

    East Lansing, United States

    2 h-index

    21 publications

    8.5K citations

  4. University of Oslo

    Oslo, Norway

    2 h-index

    2 publications

    443 citations

  5. Argonne National Laboratory

    Lemont, United States

    2 h-index

    4 publications

    466 citations

  6. University of Tennessee Health Science Center

    Memphis, United States

    2 h-index

    2 publications

    106 citations

  7. Human Technopole

    Milan, Italy

    2 h-index

    2 publications

    106 citations

  8. University of Helsinki

    Helsinki, Finland

    2 h-index

    4 publications

    72 citations

1–8 of 87

Venues

  1. BMC Bioinformatics

    4 publications · 600 citations

    4

    h-index

  2. Bioinformatics

    3 publications · 141 citations

    3

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 71 citations

    2

    h-index

  4. Scientific Reports

    2 publications · 40 citations

    2

    h-index

  5. F1000Research

    1 publications · 424 citations

    1

    h-index

1–5