Concepedia

Isoform Quantification

Isoform Quantification is the computational analysis task that determines the abundance levels of alternatively spliced transcript variants from RNA sequencing data, distinguishing it from gene-level or exon-level quantification by resolving expression at the full-length mRNA isoform level.

414

Publications

46.7K

Citations

2.3K

Authors

755

Institutions

Publications per year

2017–2026

94

Parents

Publications

414

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

, , +16

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

Ning Leng, John A. Dawson, James A. Thomson et al. · Bioinformatics · 2013 · 1.4K citations · Full text

, , +15

RNA-Seq gene expression estimation with read mapping uncertainty

Bo Li, Victor Ruotti, Ron Stewart et al. · Bioinformatics · 2009 · 1.3K citations · Full text

, , +11

Differential regulation of folate receptor isoforms in normal and malignant tissues in vivo and in established cell lines. Physiologic and clinical implications

John F. Ross, P. K. Chaudhuri, Manohar Ratnam · Cancer · 1994 · 889 citations

, , +14

Assessment of transcript reconstruction methods for RNA-seq

Tamara Steijger, Josep F. Abril, Pär G. Engström et al. · Nature Methods · 2013 · 771 citations · Full text

, , +17

1–5 of 414

Authors

2.3K

  1. WH
    Wing Hung Wong

    Stanford University, United States

    5 publications · 1.2K citations

    5

    h-index

  2. HJ
    Hui Jiang

    University of Michigan, United States

    4 publications · 786 citations

    4

    h-index

  3. ML
    Mingyao Li

    University of Pennsylvania, United States

    4 publications · 157 citations

    4

    h-index

  4. BA
    Brian A. Williams

    California Institute of Technology, United States

    3 publications · 17.1K citations

    3

    h-index

  5. BZ
    Baohong Zhang

    Pfizer (United States), United States

    3 publications · 255 citations

    3

    h-index

1–5 of 2.3K

Institutions

755

  1. University of Pennsylvania

    Philadelphia, United States

    12 h-index

    48 publications

    2.3K citations

  2. Stanford University

    Stanford, United States

    12 h-index

    41 publications

    5.7K citations

  3. The University of Melbourne

    Melbourne, Australia

    10 h-index

    37 publications

    1.8K citations

  4. Karolinska Institutet

    Stockholm, Sweden

    9 h-index

    29 publications

    7K citations

  5. University of Wisconsin–Madison

    Madison, United States

    9 h-index

    43 publications

    21.3K citations

  6. University of Washington

    Seattle, United States

    8 h-index

    35 publications

    2.6K citations

  7. Harvard University

    Cambridge, United States

    7 h-index

    17 publications

    858 citations

  8. Inserm

    Paris, France

    7 h-index

    24 publications

    1.1K citations

1–8 of 755

Venues

  1. Bioinformatics

    28 publications · 4.6K citations

    21

    h-index

  2. PLoS ONE

    12 publications · 474 citations

    12

    h-index

  3. Nucleic Acids Research

    11 publications · 805 citations

    11

    h-index

  4. BMC Bioinformatics

    11 publications · 406 citations

    11

    h-index

  5. Genome biology

    11 publications · 1.2K citations

    11

    h-index

1–5