Concepedia

Indel Reconstruction

Indel Reconstruction is a computational method within ancestral sequence reconstruction that specifically infers the historical insertion and deletion events at homologous positions in biomolecular sequences to restore the most plausible ancestral indel patterns along a phylogenetic tree.

38

Publications

2.4K

Citations

133

Authors

70

Institutions

Publications per year

2017–2026

8

Parents

Publications

38

PyRAD: assembly of <i>de novo</i> RADseq loci for phylogenetic analyses

Deren A. R. Eaton · Bioinformatics · 2014 · 751 citations · Full text

, , +14

FastML: a web server for probabilistic reconstruction of ancestral sequences

Haim Ashkenazy, O.C.K.M. Penn, Adi Doron‐Faigenboim et al. · Nucleic Acids Research · 2012 · 373 citations · Full text

, , +17

Occurrence and Consequences of Coding Sequence Insertions and Deletions in Mammalian Genomes

Martin S. Taylor, Chris P. Ponting, Richard R. Copley · Genome Research · 2004 · 142 citations · Full text

, , +16

Simultaneous Statistical Multiple Alignment and Phylogeny Reconstruction

Dirk Metzler, Arndt von Haeseler · Systematic Biology · 2005 · 119 citations · Full text

, , +15

Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP)

Gabriel Foley, Ariane Mora, Connie M. Ross et al. · PLoS Computational Biology · 2022 · 64 citations · Full text

, , +13

1–5 of 38

Authors

133

  1. RG
    Ryan G. Skophammer

    NASA Astrobiology Institute, United States

    3 publications · 137 citations

    3

    h-index

  2. JA
    Jacqueline A. Servin

    NASA Astrobiology Institute, United States

    3 publications · 137 citations

    3

    h-index

  3. CW
    Craig W. Herbold

    University of Vienna, Austria

    3 publications · 137 citations

    3

    h-index

  4. JA
    James A. Lake

    University of California, Los Angeles, United States

    3 publications · 137 citations

    3

    h-index

  5. OC
    Ofir Cohen

    Broad Institute, United States

    3 publications · 449 citations

    3

    h-index

1–5 of 133

Institutions

70

  1. University of California, Berkeley

    Berkeley, United States

    4 h-index

    8 publications

    239 citations

  2. University of California, Los Angeles

    Los Angeles, United States

    3 h-index

    9 publications

    413 citations

  3. NASA Astrobiology Institute

    Mountain View, United States

    3 h-index

    13 publications

    593 citations

  4. Tel Aviv University

    Tel Aviv, Israel

    3 h-index

    13 publications

    2.8K citations

  5. Technical University of Munich

    Munich, Germany

    2 h-index

    8 publications

    348 citations

  6. Centre for Human Genetics

    Oxford, United Kingdom

    2 h-index

    4 publications

    465 citations

  7. McGill University

    Montreal, Canada

    2 h-index

    6 publications

    210 citations

  8. The University of Queensland

    Brisbane, Australia

    2 h-index

    34 publications

    1.5K citations

1–8 of 70

Venues

  1. Systematic Biology

    4 publications · 223 citations

    4

    h-index

  2. Molecular Biology and Evolution

    MBE · 4 publications · 174 citations

    4

    h-index

  3. Journal of Molecular Evolution

    3 publications · 51 citations

    3

    h-index

  4. BMC Genomics

    2 publications · 46 citations

    2

    h-index

  5. PubMed

    Repository · 2 publications · 50 citations

    2

    h-index

1–5