Concepedia

Indel Realignment

Indel Realignment is a computational method in the field of genomic variant calling that realigns sequencing reads around insertion and deletion (indel) loci to minimize alignment artifacts and improve the accuracy of variant detection by correcting misalignments caused by indels.

14

Publications

976

Citations

82

Authors

25

Institutions

Publications per year

2017–2026

5

Parents

Publications

14

Accurate de novo and transmitted indel detection in exome-capture data using microassembly

Giuseppe Narzisi, Jason O'Rawe, Ivan Iossifov et al. · Nature Methods · 2014 · 235 citations · Full text

, , +12

ABRA: improved coding indel detection via assembly-based realignment

Lisle E. Mose, Matthew D. Wilkerson, D. Neil Hayes et al. · Bioinformatics · 2014 · 174 citations · Full text

, , +17

Development of InDel markers for Brassica rapa based on whole-genome re-sequencing

Bo Liu, Yan Wang, Wen Zhai et al. · Theoretical and Applied Genetics · 2012 · 124 citations

, , +15

Improved indel detection in DNA and RNA via realignment with ABRA2

Lisle E. Mose, Charles M. Perou, Joel S. Parker · Bioinformatics · 2019 · 99 citations · Full text

, , +17

NanoCaller for accurate detection of SNPs and indels in difficult-to-map regions from long-read sequencing by haplotype-aware deep neural networks

Mian Umair Ahsan, Qian Liu, Fang Li et al. · Genome biology · 2021 · 92 citations · Full text

, , +17

1–5 of 14

Authors

82

  1. JS
    Joel S. Parker

    University of North Carolina at Chapel Hill, United States

    2 publications · 273 citations

    2

    h-index

  2. CM
    Charles M. Perou

    University of North Carolina at Chapel Hill, United States

    2 publications · 273 citations

    2

    h-index

  3. LE
    Lisle E. Mose

    The University of Texas MD Anderson Cancer Center, United States

    2 publications · 273 citations

    2

    h-index

  4. JL
    Jiankang Li

    BGI Group (China), China

    1 publications · 10 citations

    1

    h-index

  5. JW
    Jian Wu

    Institute of Vegetables and Flowers, China

    1 publications · 124 citations

    1

    h-index

1–5 of 82

Institutions

25

  1. University of North Carolina at Chapel Hill

    Chapel Hill, United States

    2 h-index

    8 publications

    1.2K citations

  2. China National GeneBank

    Shenzhen, China

    1 h-index

    6 publications

    60 citations

  3. Cold Spring Harbor Laboratory

    Cold Spring Harbor, United States

    1 h-index

    10 publications

    2.4K citations

  4. Children's Hospital of Philadelphia

    Philadelphia, United States

    1 h-index

    4 publications

    368 citations

  5. University of Palermo

    Palermo, Italy

    1 h-index

    1 publications

    20 citations

  6. Tohoku University

    Sendai, Japan

    1 h-index

    5 publications

    170 citations

  7. University of Copenhagen

    Copenhagen, Denmark

    1 h-index

    6 publications

    120 citations

  8. Google (United States)

    Mountain View, United States

    1 h-index

    1 publications

    41 citations

1–8 of 25

Venues

  1. Bioinformatics

    3 publications · 301 citations

    3

    h-index

  2. 1

    h-index

  3. International Journal of Ophthalmology

    IJO · 1 publications · 10 citations

    1

    h-index

  4. BMC Genomics

    1 publications · 34 citations

    1

    h-index

  5. Nature Precedings

    1 publications · 17 citations

    1

    h-index

1–5