Concepedia

Host Read Removal

Host Read Removal is a computational preprocessing step in metagenomic data quality control that involves the selective elimination of sequencing reads originating from the host organism’s genome to enrich for non-host microbial sequences.

11

Publications

360

Citations

104

Authors

88

Institutions

Publications per year

2017–2026

9

Parents

Publications

11

Hostile: accurate decontamination of microbial host sequences

Bede Constantinides, Martin Hunt, Derrick W. Crook · Bioinformatics · 2023 · 65 citations · Full text

, , +17

GenCoF: a graphical user interface to rapidly remove human genome contaminants from metagenomic datasets

Matthew D Czajkowski, Daniel Vance, Steven A. Frese et al. · Bioinformatics · 2018 · 49 citations · Full text

, , +17

EasyMetagenome: A user‐friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research

Defeng Bai, Tong Chen, Jiani Xun et al. · iMeta · 2025 · 41 citations · Full text

, , +13

Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data

Gordon M. Daly, Richard M. Leggett, Samuel Stubbs et al. · PLoS ONE · 2015 · 39 citations · Full text

, , +17

HoCoRT: host contamination removal tool

Ignas Rumbavicius, Trine B. Rounge, Torbjørn Rognes · BMC Bioinformatics · 2023 · 38 citations · Full text

, , +17

1–5 of 11

Authors

104

  1. DW
    Derrick W. Crook

    University of Oxford, United Kingdom

    2 publications · 101 citations

    2

    h-index

  2. CM
    Chuang Ma

    Henan University Huaihe Hospital and Huaihe Clinical Institute, China

    1 publications · 41 citations

    1

    h-index

  3. QF
    Qunkai Fang

    Zhejiang University of Technology, China

    1 publications · 41 citations

    1

    h-index

  4. SA
    Steven A. Frese

    University of Nebraska–Lincoln, United States

    1 publications · 49 citations

    1

    h-index

  5. RH
    Ricardo H. Ramírez-González

    Norwich Research Park, United Kingdom

    1 publications · 39 citations

    1

    h-index

1–5 of 104

Institutions

88

  1. The University of Melbourne

    Melbourne, Australia

    2 h-index

    1 publications

    41 citations

  2. University of Oxford

    Oxford, United Kingdom

    2 h-index

    7 publications

    339 citations

  3. Chinese University of Hong Kong

    Hong Kong, Hong Kong

    2 h-index

    10 publications

    203 citations

  4. National Institute for Health and Care Research

    London, United Kingdom

    2 h-index

    5 publications

    238 citations

  5. Hanshan Normal University

    Chaozhou, China

    1 h-index

    3 publications

    123 citations

  6. Tea Research Institute

    Hangzhou, China

    1 h-index

    1 publications

    41 citations

  7. Shanghai Maritime University

    Shanghai, China

    1 h-index

    1 publications

    41 citations

  8. Agricultural Genomics Institute at Shenzhen

    Shenzhen, China

    1 h-index

    10 publications

    410 citations

1–8 of 88

Venues

  1. Bioinformatics

    2 publications · 114 citations

    2

    h-index

  2. PLoS ONE

    2 publications · 55 citations

    2

    h-index

  3. Infection Genetics and Evolution

    1 publications · 14 citations

    1

    h-index

  4. Genomics Proteomics & Bioinformatics

    1 publications · 18 citations

    1

    h-index

  5. Journal of Animal Science

    1 publications · 27 citations

    1

    h-index

1–5