Concepedia

Hierarchical Cell Type Classification

Hierarchical Cell Type Classification is a systematic framework in single-cell genomics that organizes cell types into a multi-level taxonomy based on progressively refined molecular signatures, distinguishing it from flat classification schemes by incorporating nested biological hierarchies reflecting developmental or functional relationships.

20

Publications

3.7K

Citations

211

Authors

55

Institutions

Publications per year

2017–2026

16

Parents

Publications

20

A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain

Zizhen Yao, Cindy T. J. van Velthoven, Michael Kunst et al. · Nature · 2023 · 1.1K citations · Full text

, , +17

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

Peng Qiu, Erin F. Simonds, Sean C. Bendall et al. · Nature Biotechnology · 2011 · 1K citations

, , +9

CHETAH: a selective, hierarchical cell type identification method for single-cell RNA sequencing

Jurrian K. de Kanter, Philip Lijnzaad, Tito Candelli et al. · Nucleic Acids Research · 2019 · 316 citations · Full text

, , +17

A harmonized atlas of mouse spinal cord cell types and their spatial organization

D. Russ, Ryan B. Patterson Cross, Li Li et al. · Nature Communications · 2021 · 274 citations · Full text

, , +17

Mapping Cellular Hierarchy by Single-Cell Analysis of the Cell Surface Repertoire

Guoji Guo, Sidinh Luc, Eugenio Marco et al. · Cell stem cell · 2013 · 238 citations · Full text

, , +8

1–5 of 20

Authors

211

  1. RB
    Robert B. Faryabi

    University of Pennsylvania, United States

    2 publications · 115 citations

    2

    h-index

  2. MH
    Michael Hawrylycz

    Allen Institute, United States

    2 publications · 1.2K citations

    2

    h-index

  3. LX
    Lanwei Xu

    University of Pennsylvania, United States

    2 publications · 115 citations

    2

    h-index

  4. NV
    Nasmil Valera Cuevas

    Allen Institute, United States

    2 publications · 1.2K citations

    2

    h-index

  5. TD
    Tim Dolbeare

    Allen Institute for Brain Science, United States

    2 publications · 1.2K citations

    2

    h-index

1–5 of 211

Institutions

55

  1. University of Pennsylvania

    Philadelphia, United States

    5 h-index

    24 publications

    3.7K citations

  2. Harvard University

    Cambridge, United States

    3 h-index

    15 publications

    5.7K citations

  3. Howard Hughes Medical Institute

    Chevy Chase, United States

    3 h-index

    7 publications

    3.8K citations

  4. Brown University

    Providence, United States

    2 h-index

    2 publications

    320 citations

  5. Princess Máxima Center

    Utrecht, The Netherlands

    2 h-index

    10 publications

    1.8K citations

  6. Columbia University

    New York, United States

    2 h-index

    5 publications

    900 citations

  7. Allen Institute

    Seattle, United States

    2 h-index

    161 publications

    109.6K citations

  8. Allen Institute for Brain Science

    Seattle, United States

    2 h-index

    161 publications

    109.6K citations

1–8 of 55

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 5 publications · 293 citations

    5

    h-index

  2. Nature Communications

    2 publications · 335 citations

    2

    h-index

  3. Nucleic Acids Research

    2 publications · 340 citations

    2

    h-index

  4. Nature Biotechnology

    1 publications · 1K citations

    1

    h-index

  5. Proceedings of the National Academy of Sciences

    PNAS · 1 publications · 39 citations

    1

    h-index

1–5