Concepedia

Graph-theoretic Pathway Modeling

Graph-Theoretic Pathway Modeling is a computational framework that represents biological pathways as directed graphs, where nodes denote molecular entities and edges represent biochemical interactions, enabling the systematic analysis of pathway structure, connectivity, and functional flow through graph-theoretical principles.

39

Publications

2.5K

Citations

150

Authors

95

Institutions

Publications per year

2017–2026

13

Parents

Publications

39

Comparison of network-based pathway analysis methods

Jason A. Papin, Joerg Stelling, Nathan D. Price et al. · Trends in biotechnology · 2004 · 368 citations

, , +11

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor

Jitao David Zhang, Stefan Wiemann · Bioinformatics · 2009 · 346 citations · Full text

, , +12

Combinatorial Complexity of Pathway Analysis in Metabolic Networks

Steffen Klamt, Jörg Stelling · Molecular Biology Reports · 2002 · 243 citations

, , +16

Probabilistic model checking of complex biological pathways

John K. Heath, Marta Kwiatkowska, Gethin Norman et al. · Theoretical Computer Science · 2007 · 241 citations

, , +14

graphite - a Bioconductor package to convert pathway topology to gene network

Gabriele Sales, Enrica Calura, Duccio Cavalieri et al. · BMC Bioinformatics · 2012 · 216 citations · Full text

, , +17

1–5 of 39

Authors

150

  1. TM
    T. M. Murali

    Virginia Tech, United States

    3 publications · 94 citations

    3

    h-index

  2. SD
    Sorin Drăghici

    Wayne State University, United States

    2 publications · 57 citations

    2

    h-index

  3. GS
    Gabriele Sales

    University of Padua, Italy

    2 publications · 350 citations

    2

    h-index

  4. SK
    Steffen Klamt

    Max Planck Institute for Dynamics of Complex Technical Systems, Germany

    2 publications · 611 citations

    2

    h-index

  5. CR
    Chiara Romualdi

    University of Padua, Italy

    2 publications · 350 citations

    2

    h-index

1–5 of 150

Institutions

95

  1. Center for Systems Biology

    Boston, United States

    3 h-index

    3 publications

    94 citations

  2. Virginia Tech

    Blacksburg, United States

    3 h-index

    8 publications

    248 citations

  3. Max Planck Institute for Dynamics of Complex Technical Systems

    Magdeburg, Germany

    2 h-index

    4 publications

    1.2K citations

  4. Harvard University

    Cambridge, United States

    2 h-index

    2 publications

    82 citations

  5. University of Padua

    Padua, Italy

    2 h-index

    8 publications

    1.3K citations

  6. Max Planck Society

    Munich, Germany

    2 h-index

    4 publications

    1.2K citations

  7. University of Oxford

    Oxford, United Kingdom

    2 h-index

    8 publications

    1.4K citations

  8. Wayne State University

    Detroit, United States

    2 h-index

    7 publications

    174 citations

1–8 of 95

Venues

  1. Bioinformatics

    3 publications · 394 citations

    3

    h-index

  2. BMC Bioinformatics

    2 publications · 229 citations

    2

    h-index

  3. F1000Research

    2 publications · 60 citations

    2

    h-index

  4. PLoS ONE

    2 publications · 123 citations

    2

    h-index

  5. Nucleic Acids Research

    2 publications · 154 citations

    2

    h-index

1–5