Concepedia

Glycan-protein Docking

Glycan-Protein Docking is a computational method that predicts the three-dimensional binding configuration of a glycan molecule to a protein receptor by modeling their molecular interactions through structure-based simulation and energetics optimization.

10

Publications

375

Citations

47

Authors

17

Institutions

Publications per year

2017–2026

6

Parents

Publications

10

Vina-Carb: Improving Glycosidic Angles during Carbohydrate Docking

Anita K. Nivedha, David F. Thieker, Spandana Makeneni et al. · Journal of Chemical Theory and Computation · 2016 · 144 citations

, , +17

GlycoTorch Vina: Docking Designed and Tested for Glycosaminoglycans

Eric D. Boittier, Jed M. Burns, Neha S. Gandhi et al. · Journal of Chemical Information and Modeling · 2020 · 43 citations

, , +17

Importance of IdoA and IdoA(2S) ring conformations in computational studies of glycosaminoglycan–protein interactions

Sergey A. Samsonov, M. Teresa Pisabarro · Carbohydrate Research · 2013 · 37 citations

, , +13

Predicting glycosaminoglycan surface protein interactions and implications for studying axonal growth

Adam R. Griffith, Claude J. Rogers, Gregory M. Miller et al. · Proceedings of the National Academy of Sciences · 2017 · 36 citations · Full text

, , +13

Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta

Morgan L. Nance, Jason W. Labonte, Jared Adolf‐Bryfogle et al. · The Journal of Physical Chemistry B · 2021 · 28 citations · Full text

, , +16

1–5 of 10

Authors

47

  1. SA
    Sergey A. Samsonov

    University of Gdańsk, Poland

    3 publications · 75 citations

    3

    h-index

  2. MZ
    Martin Zacharias

    Technical University of Munich, Germany

    2 publications · 38 citations

    2

    h-index

  3. MM
    Mateusz Marcisz

    University of Gdańsk, Poland

    2 publications · 38 citations

    2

    h-index

  4. GG
    Giovanna Ghirlanda

    Arizona State University, United States

    1 publications · 12 citations

    1

    h-index

  5. JA
    J. Andrew McCammon

    University of California San Diego, United States

    1 publications · 21 citations

    1

    h-index

1–5 of 47

Institutions

17

  1. Technical University of Munich

    Munich, Germany

    2 h-index

    3 publications

    55 citations

  2. University of Gdańsk

    Gdansk, Poland

    2 h-index

    6 publications

    110 citations

  3. Johns Hopkins University

    Baltimore, United States

    1 h-index

    3 publications

    84 citations

  4. Franklin & Marshall College

    Lancaster, United States

    1 h-index

    1 publications

    28 citations

  5. Boston Children's Hospital

    Boston, United States

    1 h-index

    1 publications

    28 citations

  6. Sichuan University

    Chengdu, China

    1 h-index

    8 publications

    128 citations

  7. Technische Universität Dresden

    Dresden, Germany

    1 h-index

    2 publications

    74 citations

  8. Gettysburg College

    Gettysburg, United States

    1 h-index

    1 publications

    28 citations

1–8 of 17

Venues

  1. Biophysical Journal

    2 publications · 33 citations

    2

    h-index

  2. Journal of Chemical Information and Modeling

    JCIM · 2 publications · 64 citations

    2

    h-index

  3. Proceedings of the National Academy of Sciences

    PNAS · 1 publications · 36 citations

    1

    h-index

  4. Journal of Chemical Theory and Computation

    JCTC · 1 publications · 144 citations

    1

    h-index

  5. Carbohydrate Research

    1 publications · 37 citations

    1

    h-index

1–5