Concepedia

Genome-based Taxonomy Databases

Genome-Based Taxonomy Databases is a taxonomic database system that organizes and classifies biological organisms primarily according to genomic sequence data, distinguishing it from traditional morphology- or phylogeny-based systems by grounding taxonomic assignments in whole-genome molecular evidence.

43

Publications

24.9K

Citations

200

Authors

95

Institutions

Publications per year

2017–2026

35

Parents

Publications

43

KEGG for taxonomy-based analysis of pathways and genomes

Minoru Kanehisa, Miho Furumichi, Yoko Sato et al. · Nucleic Acids Research · 2022 · 6.5K citations · Full text

, , +17

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

Pierre-Alain Chaumeil, Aaron J. Mussig, Philip Hugenholtz et al. · Bioinformatics · 2019 · 5.5K citations · Full text

, , +17

Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool

Ivica Letunić, Peer Bork · Nucleic Acids Research · 2024 · 3.8K citations · Full text

, , +17

GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy

Donovan H. Parks, Maria Chuvochina, Christian Rinke et al. · Nucleic Acids Research · 2021 · 2.5K citations · Full text

, , +11

TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes

Jan P. Meier‐Kolthoff, J. Sarda Carbasse, Rosa L Peinado-Olarte et al. · Nucleic Acids Research · 2021 · 2.1K citations · Full text

, , +17

1–5 of 43

Authors

200

  1. DH
    Donovan H. Parks

    The University of Queensland, Australia

    11 publications · 10.6K citations

    11

    h-index

  2. PH
    Philip Hugenholtz

    The University of Queensland, Australia

    11 publications · 10.7K citations

    11

    h-index

  3. PC
    Pierre-Alain Chaumeil

    The University of Queensland, Australia

    9 publications · 10.6K citations

    9

    h-index

  4. AJ
    Aaron J. Mussig

    The University of Queensland, Australia

    9 publications · 10.6K citations

    9

    h-index

  5. MC
    Maria Chuvochina

    The University of Queensland, Australia

    8 publications · 3.2K citations

    8

    h-index

1–5 of 200

Institutions

95

  1. The University of Queensland

    Brisbane, Australia

    12 h-index

    57 publications

    49.4K citations

  2. University of Georgia

    Athens, United States

    3 h-index

    3 publications

    528 citations

  3. University of Auckland

    Auckland, New Zealand

    3 h-index

    3 publications

    528 citations

  4. Hokkaido University

    Sapporo, Japan

    3 h-index

    14 publications

    189 citations

  5. Ecogenomics (Japan)

    Fukuoka, Japan

    3 h-index

    9 publications

    1.1K citations

  6. National Center for Biotechnology Information

    Bethesda, United States

    2 h-index

    10 publications

    818 citations

  7. University of Waterloo

    Waterloo, Canada

    2 h-index

    10 publications

    218 citations

  8. Cultura

    Mazatlán, Mexico

    2 h-index

    2 publications

    106 citations

1–8 of 95

Venues

  1. Nucleic Acids Research

    8 publications · 15.4K citations

    8

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 6 publications · 215 citations

    6

    h-index

  3. Bioinformatics

    4 publications · 7.5K citations

    4

    h-index

  4. Systematic and Applied Microbiology

    3 publications · 73 citations

    3

    h-index

  5. Frontiers in Microbiology

    3 publications · 114 citations

    3

    h-index

1–5