Concepedia

Gap Scoring Scheme

Gap Scoring Scheme is a systematic method in sequence alignment algorithms that assigns penalties to gaps based on their initiation and extension, distinguishing it from simple linear gap penalties by modeling the varying likelihood of gap formation and elongation in biological or computational contexts.

34

Publications

3.4K

Citations

106

Authors

54

Institutions

Publications per year

2017–2026

5

Variants

Gap Penalty ModelGap Penalty Scheme

Parents

Publications

34

Improved pairwise alignment of genomic dna

Robert S. Harris · 2007 · 903 citations

, , +14

Multiple sequence alignment using partial order graphs

Christopher Lee, Catherine S. Grasso, Mark Sharlow · Bioinformatics · 2002 · 823 citations · Full text

, , +14

The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment

Xun Gu, Wen‐Hsiung Li · Journal of Molecular Evolution · 1995 · 160 citations

, , +17

DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer

Gunjan Baid, Daniel E. Cook, Kishwar Shafin et al. · Nature Biotechnology · 2022 · 153 citations

, , +9

Sequence Comparison Significance and Poisson Approximation

Michael S. Waterman, Martin Vingron · Statistical Science · 1994 · 148 citations · Full text

, , +13

1–5 of 34

Authors

106

  1. RM
    Richard Mott

    Centre for Human Genetics, United Kingdom

    2 publications · 106 citations

    2

    h-index

  2. JM
    Jean Michel

    Université de Reims Champagne-Ardenne, France

    2 publications · 134 citations

    2

    h-index

  3. BY
    Benjamin Yakir

    Hebrew University of Jerusalem, Israel

    2 publications · 80 citations

    2

    h-index

  4. KW
    Keisuke Watanabe

    Yokohama City University, Japan

    1 publications · 15 citations

    1

    h-index

  5. DE
    Daniel E. Cook

    Northwestern University, United States

    1 publications · 153 citations

    1

    h-index

1–5 of 106

Institutions

54

  1. University of Michigan

    Ann Arbor, United States

    2 h-index

    9 publications

    790 citations

  2. Hebrew University of Jerusalem

    Jerusalem, Israel

    2 h-index

    3 publications

    137 citations

  3. The University of Texas at Austin

    Austin, United States

    1 h-index

    3 publications

    48 citations

  4. University of California, Los Angeles

    Los Angeles, United States

    1 h-index

    1 publications

    823 citations

  5. University of California, Berkeley

    Berkeley, United States

    1 h-index

    1 publications

    10 citations

  6. Chinese University of Hong Kong

    Hong Kong, Hong Kong

    1 h-index

    9 publications

    252 citations

  7. Google (United States)

    Mountain View, United States

    1 h-index

    16 publications

    2.4K citations

  8. Saint Mary's University

    Halifax, Canada

    1 h-index

    1 publications

    48 citations

1–8 of 54

Venues

  1. Journal of Computational Biology

    3 publications · 97 citations

    3

    h-index

  2. Computer applications in the biosciences

    CABIOS · 2 publications · 50 citations

    2

    h-index

  3. Journal of Molecular Evolution

    2 publications · 190 citations

    2

    h-index

  4. Bioinformatics

    2 publications · 854 citations

    2

    h-index

  5. Nucleic Acids Research

    2 publications · 81 citations

    2

    h-index

1–5