Concepedia

Count-based Expression Analysis

Count-Based Expression Analysis is a computational method in transcriptomics that quantifies gene expression levels by aggregating and normalizing sequence read counts aligned to genomic features, distinguishing itself from other expression analysis approaches through its reliance on discrete counting of high-throughput sequencing reads as the primary metric of transcriptional activity.

78

Publications

36.7K

Citations

280

Authors

130

Institutions

Publications per year

2017–2026

28

Parents

Publications

78

HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text

, , +11

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

Ning Leng, John A. Dawson, James A. Thomson et al. · Bioinformatics · 2013 · 1.4K citations · Full text

, , +15

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

Hugo Varet, Loraine Brillet-Guéguen, Jean‐Yves Coppée et al. · PLoS ONE · 2016 · 1.4K citations · Full text

, , +16

HTSeq – A Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · bioRxiv (Cold Spring Harbor Laboratory) · 2014 · 1.2K citations · Full text

, , +13

A comparison of methods for differential expression analysis of RNA-seq data

Charlotte Soneson, Mauro Delorenzi · BMC Bioinformatics · 2013 · 960 citations · Full text

, , +15

1–5 of 78

Authors

280

  1. SA
    Simon Anders

    Heidelberg University, Germany

    4 publications · 24.3K citations

    4

    h-index

  2. WH
    Wolfgang Huber

    European Molecular Biology Laboratory, Germany

    4 publications · 24.3K citations

    4

    h-index

  3. GK
    Gordon K. Smyth

    Walter and Eliza Hall Institute of Medical Research, Australia

    4 publications · 1.6K citations

    4

    h-index

  4. KK
    Koji Kadota

    The University of Tokyo, Japan

    3 publications · 297 citations

    3

    h-index

  5. SS
    Shian Su

    Walter and Eliza Hall Institute of Medical Research, Australia

    3 publications · 1.4K citations

    3

    h-index

1–5 of 280

Institutions

130

  1. University of Cambridge

    Cambridge, United Kingdom

    5 h-index

    17 publications

    2.6K citations

  2. Walter and Eliza Hall Institute of Medical Research

    Melbourne, Australia

    4 h-index

    15 publications

    7.1K citations

  3. The University of Melbourne

    Melbourne, Australia

    4 h-index

    11 publications

    4.9K citations

  4. European Bioinformatics Institute

    Cambridge, United Kingdom

    3 h-index

    5 publications

    665 citations

  5. Stanford University

    Stanford, United States

    3 h-index

    4 publications

    1.1K citations

  6. Texas A&M University

    College Station, United States

    3 h-index

    11 publications

    255 citations

  7. CSL (United Kingdom)

    Haywards Heath, United Kingdom

    3 h-index

    3 publications

    1.4K citations

  8. The University of Texas MD Anderson Cancer Center

    Houston, United States

    3 h-index

    6 publications

    520 citations

1–8 of 130

Venues

  1. Bioinformatics

    18 publications · 26.1K citations

    17

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 8 publications · 1.4K citations

    8

    h-index

  3. BMC Bioinformatics

    6 publications · 2K citations

    6

    h-index

  4. BMC Genomics

    5 publications · 429 citations

    5

    h-index

  5. F1000Research

    4 publications · 1.4K citations

    4

    h-index

1–5