Concepedia

Contig Extension

Contig Extension is a computational method in genome assembly that iteratively augments an existing contiguous sequence by integrating overlapping sequencing reads or adjacent contigs to increase its length and improve genome coverage during the finishing phase.

9

Publications

3K

Citations

55

Authors

30

Institutions

Publications per year

2017–2026

1

Parents

Publications

9

Scaffolding pre-assembled contigs using SSPACE

Marten Boetzer, Christiaan V. Henkel, Hans J. Jansen et al. · Bioinformatics · 2010 · 2.5K citations · Full text

, , +16

A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs

Martin Swain, Isheng Jason Tsai, Samual A Assefa et al. · Nature Protocols · 2012 · 184 citations

, , +14

The Mouse Y Chromosome Interval Necessary for Spermatogonial Proliferation is Gene Dense with Syntenic Homology to the Human AZFa Region

Sophie Mazeyrat, Noémie Saut, Carole A. Sargent et al. · Human Molecular Genetics · 1998 · 102 citations · Full text

, , +11

Finishing bacterial genome assemblies with Mix

Hayssam Soueidan, Florence Maurier, Alexis Groppi et al. · BMC Bioinformatics · 2013 · 42 citations · Full text

, , +11

SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores

Jintao Meng, Bingqiang Wang, Yanjie Wei et al. · BMC Bioinformatics · 2014 · 38 citations · Full text

, , +17

1–5 of 9

Authors

55

  1. MB
    Marianne Brüggemann

    Babraham Institute, United Kingdom

    1 publications · 28 citations

    1

    h-index

  2. SF
    Shengzhong Feng

    Shenzhen Institutes of Advanced Technology, China

    1 publications · 38 citations

    1

    h-index

  3. JX
    Jian Xian

    University of Cambridge, United Kingdom

    1 publications · 28 citations

    1

    h-index

  4. WP
    Walter Pirovano

    Bioclear Earth (Netherlands), Netherlands

    1 publications · 2.5K citations

    1

    h-index

  5. NA
    N. Affara

    University of Cambridge, United Kingdom

    1 publications · 102 citations

    1

    h-index

1–5 of 55

Institutions

30

  1. Chinese Academy of Sciences

    Beijing, China

    2 h-index

    4 publications

    136 citations

  2. Mycoplasmoses animales

    Marcy-l'Étoile, France

    1 h-index

    1 publications

    42 citations

  3. Mary Lyon Centre at MRC Harwell

    Oxford, United Kingdom

    1 h-index

    2 publications

    204 citations

  4. Guangzhou Institutes of Biomedicine and Health

    Guangzhou, China

    1 h-index

    1 publications

    22 citations

  5. The Netherlands Cancer Institute

    Amsterdam, The Netherlands

    1 h-index

    1 publications

    42 citations

  6. Instituto Paulo Gontijo

    São Paulo, Brazil

    1 h-index

    1 publications

    15 citations

  7. Babraham Institute

    Cambridge, United Kingdom

    1 h-index

    4 publications

    112 citations

  8. Université Jean Moulin Lyon III

    Lyon, France

    1 h-index

    1 publications

    102 citations

1–8 of 30

Venues

  1. BMC Bioinformatics

    2 publications · 80 citations

    2

    h-index

  2. BioTechniques

    1 publications · 15 citations

    1

    h-index

  3. PLoS ONE

    1 publications · 30 citations

    1

    h-index

  4. Analytical Chemistry

    1 publications · 22 citations

    1

    h-index

  5. The FASEB Journal

    1 publications · 28 citations

    1

    h-index

1–5