Concepedia

Codon-based Likelihood Models

Codon-Based Likelihood Models is a class of probabilistic substitution models in maximum likelihood phylogenetics that operates at the codon level, distinguishing itself from nucleotide- and amino acid-based models by explicitly modeling the evolutionary process of protein-coding sequences through codon substitution patterns and incorporating biological features such as synonymous and non-synonymous mutation rates.

45

Publications

5.9K

Citations

145

Authors

88

Institutions

Publications per year

2017–2026

7

Parents

Publications

45

Likelihood Models for Detecting Positively Selected Amino Acid Sites and Applications to the HIV-1 Envelope Gene

Rasmus Nielsen, Ziheng Yang · Genetics · 1998 · 1.7K citations · Full text

, , +12

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

Zefeng Yang · Molecular Biology and Evolution · 1998 · 1.5K citations · Full text

, , +15

Effect of Recombination on the Accuracy of the Likelihood Method for Detecting Positive Selection at Amino Acid Sites

Maria Anisimova, Rasmus Nielsen, Ziheng Yang · Genetics · 2003 · 573 citations · Full text

, , +13

A Maximum Likelihood Method for Detecting Functional Divergence at Individual Codon Sites, with Application to Gene Family Evolution

Joseph P. Bielawski, Ziheng Yang · Journal of Molecular Evolution · 2004 · 312 citations

, , +15

Recreating a Functional Ancestral Archosaur Visual Pigment

Belinda S. W. Chang, Karolina Jönsson, Manija A. Kazmi et al. · Molecular Biology and Evolution · 2002 · 165 citations

, , +17

1–5 of 45

Authors

145

  1. BS
    Belinda S. W. Chang

    University of Toronto, Canada

    7 publications · 341 citations

    7

    h-index

  2. ZY
    Ziheng Yang

    University College London, United Kingdom

    5 publications · 2.6K citations

    5

    h-index

  3. RN
    Rasmus Nielsen

    University of California, Berkeley, United States

    4 publications · 2.4K citations

    4

    h-index

  4. ED
    Eduardo de A. Gutierrez

    Instituto de Recursos Naturales y Agrobiología de Sevilla, Spain

    2 publications · 66 citations

    2

    h-index

  5. JP
    Joseph P. Bielawski

    Dalhousie University, Canada

    2 publications · 328 citations

    2

    h-index

1–5 of 145

Institutions

88

  1. University of Toronto

    Toronto, Canada

    6 h-index

    24 publications

    707 citations

  2. University College London

    London, United Kingdom

    6 h-index

    8 publications

    5K citations

  3. Cornell University

    Ithaca, United States

    4 h-index

    6 publications

    962 citations

  4. Universidade do Porto

    Porto, Portugal

    3 h-index

    11 publications

    296 citations

  5. University of California, Berkeley

    Berkeley, United States

    3 h-index

    5 publications

    3.5K citations

  6. Harvard University

    Cambridge, United States

    2 h-index

    3 publications

    169 citations

  7. Inserm

    Paris, France

    2 h-index

    2 publications

    75 citations

  8. Royal Ontario Museum

    Toronto, Canada

    2 h-index

    2 publications

    66 citations

1–8 of 88

Venues

  1. Molecular Biology and Evolution

    MBE · 13 publications · 2.3K citations

    13

    h-index

  2. PLoS ONE

    4 publications · 127 citations

    4

    h-index

  3. Genetics

    3 publications · 2.3K citations

    3

    h-index

  4. Journal of Molecular Evolution

    3 publications · 340 citations

    3

    h-index

  5. BMC Evolutionary Biology

    2 publications · 66 citations

    2

    h-index

1–5