Concepedia

Codon Occupancy Analysis

Codon Occupancy Analysis is a computational method in ribosome profiling that quantifies the frequency and duration of ribosomal pauses at individual codons during mRNA translation, distinguishing it from other ribosome footprint analyses by focusing specifically on codon-resolution translational dynamics.

10

Publications

1.2K

Citations

32

Authors

20

Institutions

Publications per year

2017–2026

4

Parents

Publications

10

Positively Charged Residues Are the Major Determinants of Ribosomal Velocity

Catherine A. Charneski, Laurence D. Hurst · PLoS Biology · 2013 · 316 citations · Full text

, , +14

Wobble base-pairing slows in vivo translation elongation in metazoans

Michael Stadler, Andrew Fire · RNA · 2011 · 202 citations · Full text

, , +17

Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation

Carlo G. Artieri, Hunter B. Fraser · Genome Research · 2014 · 154 citations · Full text

, , +17

The allosteric three-site model for the ribosomal elongation cycle

Andreas Gnirke, Ute Geigenmüller, Hans‐Jörg Rheinberger et al. · Journal of Biological Chemistry · 1989 · 126 citations · Full text

, , +16

RiboToolkit: an integrated platform for analysis and annotation of ribosome profiling data to decode mRNA translation at codon resolution

Qi Liu, Tanya Shvarts, Piotr Sliz et al. · Nucleic Acids Research · 2020 · 88 citations · Full text

, , +11

1–5 of 10

Authors

32

  1. GF
    Giovanni Franzo

    University of Padua, Italy

    1 publications · 51 citations

    1

    h-index

  2. MC
    Mattia Cecchinato

    University of Padua, Italy

    1 publications · 51 citations

    1

    h-index

  3. MD
    Michele Drigo

    University of Padua, Italy

    1 publications · 51 citations

    1

    h-index

  4. HB
    Hunter B. Fraser

    Stanford University, United States

    1 publications · 154 citations

    1

    h-index

  5. CD
    Caia D. S. Duncan

    University of Cambridge, United Kingdom

    1 publications · 59 citations

    1

    h-index

1–5 of 32

Institutions

20

  1. Stanford University

    Stanford, United States

    2 h-index

    4 publications

    712 citations

  2. Harvard Affiliated Emergency Medicine Residency

    Boston, United States

    1 h-index

    1 publications

    88 citations

  3. University of Bern

    Bern, Switzerland

    1 h-index

    4 publications

    196 citations

  4. University of Padua

    Padua, Italy

    1 h-index

    4 publications

    204 citations

  5. Institute of Biophysics

    Sofia, Bulgaria

    1 h-index

    1 publications

    81 citations

  6. Bulgarian Academy of Sciences

    Sofia, Bulgaria

    1 h-index

    2 publications

    162 citations

  7. University of Lausanne

    Lausanne, Switzerland

    1 h-index

    1 publications

    49 citations

  8. Commissariat à l'Énergie Atomique et aux Énergies Alternatives

    Paris, France

    1 h-index

    4 publications

    172 citations

1–8 of 20

Venues

  1. Bioinformatics

    2 publications · 124 citations

    2

    h-index

  2. Genome Research

    GR · 1 publications · 154 citations

    1

    h-index

  3. Nature Communications

    1 publications · 49 citations

    1

    h-index

  4. RNA

    1 publications · 202 citations

    1

    h-index

  5. Nucleic Acids Research

    1 publications · 88 citations

    1

    h-index

1–5