Concepedia

Cell-type-specific Pathway Scoring

Cell-Type-Specific Pathway Scoring is a computational method that quantifies pathway activity within individual cell types by integrating gene expression data with pathway topology, thereby enabling the inference of functionally relevant biological processes specific to defined cellular contexts.

5

Publications

150

Citations

24

Authors

17

Institutions

Publications per year

2017–2026

4

Parents

Publications

5

Variance-adjusted Mahalanobis (VAM): a fast and accurate method for cell-specific gene set scoring

H. Robert Frost · Nucleic Acids Research · 2020 · 70 citations · Full text

, , +17

Cell-specific prediction and application of drug-induced gene expression profiles

Rachel Hodos, Ping Zhang, Hao-Chih Lee et al. · 2017 · 31 citations · Full text

, , +14

PriPath: identifying dysregulated pathways from differential gene expression via grouping, scoring, and modeling with an embedded feature selection approach

Malik Yousef, Fatma Ozdemir, Amhar Jaber et al. · BMC Bioinformatics · 2023 · 25 citations · Full text

, , +17

A signal transduction score flow algorithm for cyclic cellular pathway analysis, which combines transcriptome and ChIP-seq data

Tülin Erşahin, Volkan Atalay, Cevdet Aykanat et al. · Molecular BioSystems · 2012 · 13 citations · Full text

, , +17

BioTarget: A Computational Framework Identifying Cancer Type Specific Transcriptional Targets of Immune Response Pathways

Tham H. Hoang, Yue Zhao, Y. W. Lam et al. · Scientific Reports · 2019 · 11 citations · Full text

, , +17

1–5 of 5

Authors

24

  1. AJ
    Amhar Jaber

    Ruhr University Bochum, Germany

    1 publications · 25 citations

    1

    h-index

  2. TE
    Tülin Erşahin

    Bilkent University, Türkiye

    1 publications · 13 citations

    1

    h-index

  3. NR
    Neil R. Clark

    Icahn School of Medicine at Mount Sinai, United States

    1 publications · 31 citations

    1

    h-index

  4. PZ
    Ping Zhang

    The Ohio State University, United States

    1 publications · 31 citations

    1

    h-index

  5. YL
    Yuna Landais

    Université Paris Sciences et Lettres, France

    1 publications · 11 citations

    1

    h-index

1–5 of 24

Institutions

17

  1. Courant Institute of Mathematical Sciences

    New York, United States

    1 h-index

    1 publications

    31 citations

  2. New York University

    New York, United States

    1 h-index

    1 publications

    31 citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    1 h-index

    1 publications

    11 citations

  4. New York Proton Center

    New York, United States

    1 h-index

    7 publications

    217 citations

  5. Université Paris Sciences et Lettres

    Paris, France

    1 h-index

    1 publications

    11 citations

  6. Massachusetts Institute of Technology

    Cambridge, United States

    1 h-index

    1 publications

    31 citations

  7. Icahn School of Medicine at Mount Sinai

    New York, United States

    1 h-index

    8 publications

    248 citations

  8. Middle East Technical University

    Ankara, Türkiye

    1 h-index

    1 publications

    13 citations

1–8 of 17

Venues

  1. Nucleic Acids Research

    1 publications · 70 citations

    1

    h-index

  2. Nature Communications

    1 publications · 11 citations

    1

    h-index

  3. Molecular BioSystems

    1 publications · 13 citations

    1

    h-index

  4. BMC Bioinformatics

    1 publications · 25 citations

    1

    h-index

  5. Scientific Reports

    1 publications · 11 citations

1–5