Volkan Atalay

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Naihui Zhou, Yuxiang Jiang, Timothy Bergquist et al. · Genome biology · 2019 · 482 citations · Full text

Life Sciences, Bioinformatics, Biology +17

DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations

Ahmet Süreyya Rifaioğlu, Esra Nalbat, Volkan Atalay et al. · Chemical Science · 2020 · 243 citations · Full text

Pharmacy, Bioinformatics, Medicinal Chemistry +17

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

Alperen Dalkıran, Ahmet Süreyya Rifaioğlu, María Martin et al. · BMC Bioinformatics · 2018 · 176 citations · Full text

Life Sciences, Biochemistry, Bioinformatics +14

DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks

Ahmet Süreyya Rifaioğlu, Tunca Doğan, María Martin et al. · Scientific Reports · 2019 · 169 citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +13

MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery

Ahmet Süreyya Rifaioğlu, Rengül Çetin-Atalay, Deniz Kahraman et al. · Bioinformatics · 2020 · 122 citations

Pharmacy, Bioinformatics, Medicinal Chemistry +17