Concepedia

Cell-state Inference

Cell-State Inference is a computational method that distinguishes cellular phenotypes by identifying and characterizing transient, dynamic, or hierarchical functional states from single-cell genomic data based on gene expression, epigenetic, or multimodal molecular profiles.

96

Publications

16K

Citations

513

Authors

234

Institutions

Publications per year

2017–2026

63

Parents

Publications

96

SCENIC: single-cell regulatory network inference and clustering

Sara Aibar, Carmen Bravo González‐Blas, Thomas Moerman et al. · Nature Methods · 2017 · 6.9K citations · Full text

, , +17

Using Bayesian Networks to Analyze Expression Data

Nir Friedman, Michal Linial, Iftach Nachman et al. · Journal of Computational Biology · 2000 · 3.3K citations

, , +8

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

Bernd Bodenmiller, Eli R. Zunder, Rachel Finck et al. · Nature Biotechnology · 2012 · 568 citations

, , +13

muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data

Helena L. Crowell, Charlotte Soneson, Pierre‐Luc Germain et al. · Nature Communications · 2020 · 495 citations · Full text

, , +17

Fundamental limits on dynamic inference from single-cell snapshots

Caleb Weinreb, Samuel L. Wolock, Betsabeh Khoramian Tusi et al. · Proceedings of the National Academy of Sciences · 2018 · 354 citations · Full text

, , +16

1–5 of 96

Authors

513

  1. RW
    Roy Wollman

    University of California, Los Angeles, United States

    3 publications · 255 citations

    3

    h-index

  2. GP
    Garry P. Nolan

    Stanford University, United States

    3 publications · 705 citations

    3

    h-index

  3. DP
    Dana Pe’er

    Memorial Sloan Kettering Cancer Center, United States

    3 publications · 3.7K citations

    3

    h-index

  4. CS
    Charlotte Soneson

    SIB Swiss Institute of Bioinformatics, Switzerland

    2 publications · 547 citations

    2

    h-index

  5. BK
    Betsabeh Khoramian Tusi

    Harvard University, United States

    2 publications · 381 citations

    2

    h-index

1–5 of 513

Institutions

234

  1. Harvard University

    Cambridge, United States

    7 h-index

    44 publications

    5.6K citations

  2. University of Zurich

    Zurich, Switzerland

    6 h-index

    14 publications

    2.7K citations

  3. University of Cambridge

    Cambridge, United Kingdom

    6 h-index

    8 publications

    210 citations

  4. Center for Systems Biology

    Boston, United States

    6 h-index

    21 publications

    2K citations

  5. Stanford University

    Stanford, United States

    5 h-index

    21 publications

    6.8K citations

  6. Johns Hopkins University

    Baltimore, United States

    5 h-index

    17 publications

    289 citations

  7. SIB Swiss Institute of Bioinformatics

    Lausanne, Switzerland

    5 h-index

    11 publications

    1.9K citations

  8. University of California, Los Angeles

    Los Angeles, United States

    5 h-index

    16 publications

    769 citations

1–8 of 234

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 8 publications · 209 citations

    8

    h-index

  2. Nature Communications

    4 publications · 776 citations

    4

    h-index

  3. Current Opinion in Systems Biology

    4 publications · 153 citations

    4

    h-index

  4. Molecular Systems Biology

    4 publications · 254 citations

    4

    h-index

  5. Bioinformatics

    4 publications · 136 citations

    4

    h-index

1–5