Concepedia

Binding Mode Prediction

Binding Mode Prediction is a computational task in structural biology that identifies the specific three-dimensional orientation and conformation adopted by two interacting proteins at their binding interface, distinguishing it from other protein docking subproblems by focusing exclusively on the spatial arrangement of the bound complex rather than binding affinity or kinetics.

911

Publications

87.7K

Citations

4.8K

Authors

1.3K

Institutions

Publications per year

2017–2026

346

Parents

Publications

911

AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

Oleg Trott, Arthur J. Olson · Journal of Computational Chemistry · 2009 · 37.1K citations · Full text

, , +17

A Critical Assessment of Docking Programs and Scoring Functions

Gregory L. Warren, C. Webster Andrews, Anna‐Maria Capelli et al. · Journal of Medicinal Chemistry · 2005 · 1.7K citations

, , +17

Improved Docking of Polypeptides with Glide

Ivan Tubert‐Brohman, Woody Sherman, Matt Repasky et al. · Journal of Chemical Information and Modeling · 2013 · 1.3K citations

, , +17

Further development and validation of empirical scoring functions for structure-based binding affinity prediction

Renxiao Wang, Luhua Lai, Shaomeng Wang · Journal of Computer-Aided Molecular Design · 2002 · 1.2K citations · Full text

, , +16

Molecular Docking

Garrett M. Morris, Marguerita Lim-Wilby · Methods in molecular biology · 2008 · 1.1K citations

, , +17

1–5 of 911

Authors

4.8K

  1. XY
    Xiaojun Yao

    Lanzhou University, China

    13 publications · 1.1K citations

    13

    h-index

  2. CT
    Claudiu T. Supuran

    University of Florence, Italy

    9 publications · 170 citations

    10

    h-index

  3. GK
    G. Klebe

    Philipps University of Marburg, Germany

    9 publications · 735 citations

    9

    h-index

  4. XZ
    Xiaoqin Zou

    University of Missouri, United States

    8 publications · 637 citations

    8

    h-index

  5. TT
    Tiziano Tuccinardi

    University of Pisa, Italy

    8 publications · 259 citations

    8

    h-index

1–5 of 4.8K

Institutions

1.3K

  1. Centre National de la Recherche Scientifique

    Paris, France

    20 h-index

    128 publications

    5.9K citations

  2. University of Siena

    Siena, Italy

    12 h-index

    61 publications

    2.2K citations

  3. Lanzhou University

    Lanzhou, China

    12 h-index

    43 publications

    3.2K citations

  4. Chinese Academy of Sciences

    Beijing, China

    11 h-index

    51 publications

    4.2K citations

  5. Sapienza University of Rome

    Rome, Italy

    11 h-index

    54 publications

    2.3K citations

  6. Al-Azhar University

    Cairo, Egypt

    11 h-index

    29 publications

    965 citations

  7. University of Florence

    Florence, Italy

    11 h-index

    39 publications

    2.5K citations

  8. University of California San Diego

    San Diego, United States

    10 h-index

    32 publications

    3.1K citations

1–8 of 1.3K

Venues

  1. Journal of Medicinal Chemistry

    93 publications · 8.4K citations

    45

    h-index

  2. Journal of Chemical Information and Modeling

    JCIM · 70 publications · 4.5K citations

    32

    h-index

  3. Proteins Structure Function and Bioinformatics

    31 publications · 2.2K citations

    22

    h-index

  4. ChemMedChem

    31 publications · 1.2K citations

    21

    h-index

  5. Journal of Biomolecular Structure and Dynamics

    26 publications · 688 citations

    18

    h-index

1–5