Concepedia

Barcode Demultiplexing

Barcode Demultiplexing is a computational procedure in metagenomic data preprocessing that assigns multiplexed sequencing reads to their respective biological samples based on unique nucleotide barcode sequences ligated during library preparation.

20

Publications

2K

Citations

94

Authors

60

Institutions

Publications per year

2017–2026

14

Parents

Publications

20

FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms

Matthias Dodt, Johannes T. Roehr, Rina Ahmed-Begrich et al. · Biology · 2012 · 767 citations · Full text

, , +16

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

Ryan R. Wick, Louise M. Judd, Kathryn E. Holt · PLoS Computational Biology · 2018 · 217 citations · Full text

, , +14

Flexbar 3.0 – SIMD and multicore parallelization

Johannes T. Roehr, Christoph Dieterich, Knut Reinert · Bioinformatics · 2017 · 216 citations · Full text

, , +13

GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments

Koen Herten, Matthew S. Hestand, Joris Vermeesch et al. · BMC Bioinformatics · 2015 · 158 citations · Full text

, , +17

scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data

Luyi Tian, Shian Su, Xueyi Dong et al. · PLoS Computational Biology · 2018 · 139 citations · Full text

, , +17

1–5 of 20

Authors

94

  1. MA
    Martin A. Smith

    University of California, Irvine, United States

    2 publications · 126 citations

    2

    h-index

  2. LB
    Lilly Bojarski

    Centre Hospitalier Universitaire Sainte-Justine, Canada

    2 publications · 126 citations

    2

    h-index

  3. MC
    Morghan C. Lucas

    Garvan Institute of Medical Research, Australia

    2 publications · 126 citations

    2

    h-index

  4. JT
    Johannes T. Roehr

    Max Planck Institute for Molecular Genetics, Germany

    2 publications · 983 citations

    2

    h-index

  5. KB
    Kirston Barton

    Garvan Institute of Medical Research, Australia

    2 publications · 126 citations

    2

    h-index

1–5 of 94

Institutions

60

  1. The University of Melbourne

    Melbourne, Australia

    4 h-index

    12 publications

    1.2K citations

  2. UNSW Sydney

    Sydney, Australia

    2 h-index

    8 publications

    504 citations

  3. Université de Montréal

    Montreal, Canada

    2 h-index

    2 publications

    126 citations

  4. St Vincent's Clinic

    Darlinghurst, Australia

    2 h-index

    8 publications

    504 citations

  5. Zhejiang University

    Hangzhou, China

    2 h-index

    2 publications

    149 citations

  6. Centre Hospitalier Universitaire Sainte-Justine

    Montreal, Canada

    2 h-index

    2 publications

    126 citations

  7. Universitat Pompeu Fabra

    Barcelona, Spain

    2 h-index

    4 publications

    252 citations

  8. Garvan Institute of Medical Research

    Darlinghurst, Australia

    2 h-index

    18 publications

    1.1K citations

1–8 of 60

Venues

  1. BMC Bioinformatics

    6 publications · 262 citations

    6

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 40 citations

    3

    h-index

  3. PLoS Computational Biology

    2 publications · 356 citations

    2

    h-index

  4. Bioinformatics

    2 publications · 257 citations

    2

    h-index

  5. Proceedings of the National Academy of Sciences

    PNAS · 1 publications · 17 citations

    1

    h-index

1–5