Concepedia

Backbone Loop Modeling

Backbone Loop Modeling is a computational method in structural biology that specifically predicts the three-dimensional conformation of loop regions in protein structures while maintaining the rigidity of the surrounding secondary structural elements.

69

Publications

6.5K

Citations

249

Authors

136

Institutions

Publications per year

2017–2026

4

Parents

Publications

69

The VSGB 2.0 model: A next generation energy model for high resolution protein structure modeling

Jianing Li, Robert Abel, Kai Zhu et al. · Proteins Structure Function and Bioinformatics · 2011 · 1.1K citations · Full text

, , +17

Antibody framework residues affecting the conformation of the hypervariable loops

Jefferson Foote, Greg Winter · Journal of Molecular Biology · 1992 · 535 citations

, , +13

RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design

Po‐Ssu Huang, Yih‐En Andrew Ban, Florian Richter et al. · PLoS ONE · 2011 · 414 citations · Full text

, , +16

Modeling structurally variable regions in homologous proteins with rosetta

Carol A. Rohl, Charlie E. M. Strauss, Dylan Chivian et al. · Proteins Structure Function and Bioinformatics · 2004 · 328 citations

, , +17

A kinematic view of loop closure

Evangelos A. Coutsias, Chaok Seok, Matthew P. Jacobson et al. · Journal of Computational Chemistry · 2004 · 308 citations

, , +16

1–5 of 69

Authors

249

  1. DB
    David Baker

    University of Washington, United States

    4 publications · 851 citations

    4

    h-index

  2. RA
    Richard A. Friesner

    Columbia University, United States

    4 publications · 1.4K citations

    4

    h-index

  3. KZ
    Kai Zhu

    Schrodinger (United States), United States

    4 publications · 1.3K citations

    4

    h-index

  4. RF
    Richard Fine

    BioPredict (United States), United States

    3 publications · 562 citations

    3

    h-index

  5. MP
    Matthew P. Jacobson

    University of California, San Francisco, United States

    3 publications · 384 citations

    3

    h-index

1–5 of 249

Institutions

136

  1. Columbia University

    New York, United States

    8 h-index

    28 publications

    6.2K citations

  2. Howard Hughes Medical Institute

    Chevy Chase, United States

    5 h-index

    11 publications

    1.9K citations

  3. University of California, San Francisco

    San Francisco, United States

    4 h-index

    8 publications

    2.2K citations

  4. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    7 publications

    378 citations

  5. University of Washington

    Seattle, United States

    4 h-index

    17 publications

    3.1K citations

  6. Stanford University

    Stanford, United States

    3 h-index

    8 publications

    397 citations

  7. Université Paris Cité

    Paris, France

    3 h-index

    11 publications

    474 citations

  8. Schrodinger (United States)

    New York, United States

    3 h-index

    6 publications

    3.6K citations

1–8 of 136

Venues

  1. Proteins Structure Function and Bioinformatics

    16 publications · 2.7K citations

    16

    h-index

  2. Journal of Molecular Biology

    JMB · 9 publications · 1.2K citations

    9

    h-index

  3. Journal of Computational Chemistry

    5 publications · 389 citations

    5

    h-index

  4. Journal of Chemical Theory and Computation

    JCTC · 3 publications · 73 citations

    3

    h-index

  5. Protein Engineering Design and Selection

    PEDS · 3 publications · 277 citations

    3

    h-index

1–5