Concepedia

Annotation Transfer

Annotation Transfer is a computational method in the domain of sequence analysis that leverages homology-based inference to assign functional or structural annotations from characterized biological sequences to uncharacterized target sequences by exploiting alignment probabilities derived from profile hidden Markov models.

54

Publications

6.2K

Citations

222

Authors

111

Institutions

Publications per year

2017–2026

17

Parents

Publications

54

rtracklayer: an R package for interfacing with genome browsers

Michael Lawrence, Robert Gentleman, Vincent J. Carey · Bioinformatics · 2009 · 1.1K citations · Full text

, , +15

Functional maps

Maks Ovsjanikov, Mirela Ben‐Chen, Justin Solomon et al. · ACM Transactions on Graphics · 2012 · 713 citations

, , +17

Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs

Haiyuan Yu, Nicholas M. Luscombe, Hao Lu et al. · Genome Research · 2004 · 596 citations · Full text

, , +13

Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores

Cyrus A. Wilson, Julia Kreychman, Mark Gerstein · Journal of Molecular Biology · 2000 · 379 citations

, , +16

RATT: Rapid Annotation Transfer Tool

Thomas D. Otto, G. Dillon, Wim S. Degrave et al. · Nucleic Acids Research · 2011 · 318 citations · Full text

, , +17

1–5 of 54

Authors

222

  1. ML
    Maria Littmann

    Technical University of Munich, Germany

    4 publications · 358 citations

    4

    h-index

  2. BR
    Burkhard Rost

    Columbia University, United States

    4 publications · 358 citations

    4

    h-index

  3. MH
    Michael Heinzinger

    Technical University of Munich, Germany

    4 publications · 358 citations

    4

    h-index

  4. LG
    Leonidas Guibas

    Stanford University, United States

    3 publications · 765 citations

    3

    h-index

  5. CO
    Christine Orengo

    University College London, United Kingdom

    3 publications · 196 citations

    3

    h-index

1–5 of 222

Institutions

111

  1. Technical University of Munich

    Munich, Germany

    5 h-index

    27 publications

    3.4K citations

  2. University College London

    London, United Kingdom

    4 h-index

    12 publications

    749 citations

  3. Yale University

    New Haven, United States

    3 h-index

    12 publications

    5.6K citations

  4. Harvard University

    Cambridge, United States

    3 h-index

    7 publications

    5K citations

  5. European Bioinformatics Institute

    Cambridge, United Kingdom

    3 h-index

    14 publications

    3.1K citations

  6. Institute for Advanced Study

    Berlin, Germany

    3 h-index

    3 publications

    151 citations

  7. Institute of Structural and Molecular Biology

    London, United Kingdom

    3 h-index

    9 publications

    588 citations

  8. Stanford University

    Stanford, United States

    3 h-index

    10 publications

    3K citations

1–8 of 111

Venues

  1. Nucleic Acids Research

    7 publications · 1.1K citations

    7

    h-index

  2. BMC Bioinformatics

    6 publications · 290 citations

    6

    h-index

  3. Bioinformatics

    6 publications · 1.4K citations

    6

    h-index

  4. Genome Research

    GR · 3 publications · 847 citations

    3

    h-index

  5. BMC Genomics

    3 publications · 329 citations

    3

    h-index

1–5