Concepedia

Alignment Scoring Schemes

Alignment Scoring Schemes is a formal metric system in bioinformatics that quantifies the quality of pairwise sequence alignments by assigning scores to matches, mismatches, and gaps, thereby enabling the computational evaluation and optimization of alignment accuracy.

89

Publications

24.9K

Citations

208

Authors

132

Institutions

Publications per year

2017–2026

7

Variants

Alignment Scoring Systems

Parents

Publications

89

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

Kazutaka Katoh · Nucleic Acids Research · 2002 · 17.8K citations · Full text

, , +13

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences.

Gerald Z. Hertz, Gary D. Stormo · Bioinformatics · 1999 · 1.3K citations · Full text

, , +13

DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment.

Burkhard Morgenstern · Bioinformatics · 1999 · 686 citations · Full text

, , +11

GUIDANCE: a web server for assessing alignment confidence scores

O.C.K.M. Penn, Eran Privman, Haim Ashkenazy et al. · Nucleic Acids Research · 2010 · 632 citations · Full text

, , +12

Magic-BLAST, an accurate RNA-seq aligner for long and short reads

Grzegorz M. Boratyn, Jean Thierry‐Mieg, Danielle Thierry‐Mieg et al. · BMC Bioinformatics · 2019 · 368 citations · Full text

, , +15

1–5 of 89

Authors

208

  1. SL
    Sergey L. Sheetlin

    National Center for Biotechnology Information, United States

    4 publications · 102 citations

    4

    h-index

  2. MC
    Martin C. Frith

    The University of Tokyo, Japan

    4 publications · 337 citations

    4

    h-index

  3. JL
    John L. Spouge

    National Center for Biotechnology Information, United States

    4 publications · 102 citations

    4

    h-index

  4. WM
    Webb Miller

    Pennsylvania State University, United States

    4 publications · 156 citations

    4

    h-index

  5. SF
    Stephen F. Altschul

    National Institutes of Health, United States

    3 publications · 350 citations

    3

    h-index

1–5 of 208

Institutions

132

  1. National Center for Biotechnology Information

    Bethesda, United States

    10 h-index

    28 publications

    2.7K citations

  2. National Institutes of Health

    Bethesda, United States

    8 h-index

    23 publications

    2.5K citations

  3. Pennsylvania State University

    State College, United States

    4 h-index

    8 publications

    300 citations

  4. The University of Tokyo

    Tokyo, Japan

    3 h-index

    6 publications

    368 citations

  5. National Institute of Advanced Industrial Science and Technology

    Tsukuba, Japan

    3 h-index

    10 publications

    1.1K citations

  6. Kyoto University

    Kyoto, Japan

    3 h-index

    4 publications

    18.6K citations

  7. University College Dublin

    Dublin, Ireland

    2 h-index

    6 publications

    372 citations

  8. Tampere University Hospital

    Tampere, Finland

    2 h-index

    5 publications

    143 citations

1–8 of 132

Venues

  1. Bioinformatics

    21 publications · 2.6K citations

    17

    h-index

  2. BMC Bioinformatics

    15 publications · 967 citations

    13

    h-index

  3. Nucleic Acids Research

    8 publications · 19.2K citations

    8

    h-index

  4. Journal of Computational Biology

    8 publications · 355 citations

    8

    h-index

  5. Computer applications in the biosciences

    CABIOS · 5 publications · 144 citations

    5

    h-index

1–5