Concepedia

Adapter Contamination Detection

Adapter Contamination Detection is a sequence quality control method that identifies residual adapter sequences inadvertently incorporated into nucleotide reads during library preparation, distinguishing it from other quality assessment techniques by specifically targeting artifacts arising from incomplete adapter trimming in high-throughput sequencing data.

11

Publications

2.8K

Citations

42

Authors

24

Institutions

Publications per year

2017–2026

5

Parents

Publications

11

Ultrafast one‐pass FASTQ data preprocessing, quality control, and deduplication using fastp

Shifu Chen · iMeta · 2023 · 2K citations · Full text

, , +11

HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly

Sheina B. Sim, Renée L. Corpuz, Tyler J. Simmonds et al. · BMC Genomics · 2022 · 285 citations · Full text

, , +17

SeqPurge: highly-sensitive adapter trimming for paired-end NGS data

Marc Sturm, Christopher Schroeder, Peter Bauer · BMC Bioinformatics · 2016 · 169 citations · Full text

, , +15

Fastq_clean: An optimized pipeline to clean the Illumina sequencing data with quality control

Mi Zhang, Honghe Sun, Zhangjun Fei et al. · 2014 · 86 citations

, , +13

High-throughput robust single-cell DNA methylation profiling with sciMETv2

Ruth V. Nichols, Brendan L. O’Connell, Ryan M. Mulqueen et al. · Nature Communications · 2022 · 66 citations · Full text

, , +17

1–5 of 11

Authors

42

  1. RL
    Renée L. Corpuz

    Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States

    1 publications · 285 citations

    1

    h-index

  2. GC
    G. Craig Yencho

    North Carolina State University, United States

    1 publications · 24 citations

    1

    h-index

  3. AR
    Ashley R. Woodfin

    Northwestern University, United States

    1 publications · 66 citations

    1

    h-index

  4. EM
    Emese Meglécz

    Centre National de la Recherche Scientifique, France

    1 publications · 42 citations

    1

    h-index

  5. MZ
    Mi Zhang

    Toho University, Japan

    1 publications · 86 citations

    1

    h-index

1–5 of 42

Institutions

24

  1. Oregon Health & Science University

    Portland, United States

    1 h-index

    6 publications

    396 citations

  2. University of Edinburgh

    Edinburgh, United Kingdom

    1 h-index

    1 publications

    44 citations

  3. Aix-Marseille Université

    Marseille, France

    1 h-index

    1 publications

    42 citations

  4. Synthetic Genomics (United States)

    La Jolla, United States

    1 h-index

    1 publications

    60 citations

  5. Oak Ridge Associated Universities

    Oak Ridge, United States

    1 h-index

    1 publications

    285 citations

  6. University of Oxford

    Oxford, United Kingdom

    1 h-index

    1 publications

    19 citations

  7. Shenzhen Institutes of Advanced Technology

    Shenzhen, China

    1 h-index

    1 publications

    2K citations

  8. Edinburgh Genomics

    Edinburgh, United Kingdom

    1 h-index

    1 publications

    44 citations

1–8 of 24

Venues

  1. Molecular Ecology Notes

    1 publications · 42 citations

    1

    h-index

  2. Frontiers in Genetics

    1 publications · 44 citations

    1

    h-index

  3. Nature Communications

    1 publications · 66 citations

    1

    h-index

  4. BMC Bioinformatics

    1 publications · 169 citations

    1

    h-index

  5. BMC Genomics

    1 publications · 285 citations

    1

    h-index

1–5