Concepedia

Ab Initio Loop Modeling

Ab Initio Loop Modeling is a computational method in structural biology that predicts protein loop conformations from first principles without relying on known structural templates, distinguishing it from template-based loop modeling approaches.

37

Publications

3.4K

Citations

123

Authors

59

Institutions

Publications per year

2017–2026

3

Variants

De Novo Loop Modeling

Parents

Publications

37

GalaxyWEB server for protein structure prediction and refinement

Jin Hwan Ko, Hahnbeom Park, Lim Heo et al. · Nucleic Acids Research · 2012 · 1K citations · Full text

, , +17

Evaluating conformational free energies: The colony energy and its application to the problem of loop prediction

Zhexin Xiang, Cinque Soto, Barry Honig · Proceedings of the National Academy of Sciences · 2002 · 368 citations · Full text

, , +17

Antibody structure determination using a combination of homology modeling, energy‐based refinement, and loop prediction

Kai Zhu, Tyler Day, Dora Toledo Warshaviak et al. · Proteins Structure Function and Bioinformatics · 2014 · 247 citations · Full text

, , +16

Modeling antibody hypervariable loops: a combined algorithm.

Andrew C.R. Martin, Janet C. Cheetham, Anthony R. Rees · Proceedings of the National Academy of Sciences · 1989 · 196 citations · Full text

, , +17

LOOPER: a molecular mechanics-based algorithm for protein loop prediction

Velin Z. Spassov, P.K. Flook, Lisa Yan · Protein Engineering Design and Selection · 2008 · 155 citations · Full text

, , +6

1–5 of 37

Authors

123

  1. CS
    Chaok Seok

    Seoul National University, South Korea

    3 publications · 1.1K citations

    3

    h-index

  2. RO
    Roman Osman

    Icahn School of Medicine at Mount Sinai, United States

    2 publications · 42 citations

    2

    h-index

  3. KZ
    Kai Zhu

    Schrodinger (United States), United States

    2 publications · 280 citations

    2

    h-index

  4. MC
    Meng Cui

    Northeastern University, United States

    2 publications · 42 citations

    2

    h-index

  5. TD
    Tyler Day

    Schrodinger (United States), United States

    2 publications · 280 citations

    2

    h-index

1–5 of 123

Institutions

59

  1. Seoul National University

    Seoul, South Korea

    3 h-index

    14 publications

    4.6K citations

  2. Schrodinger (United States)

    New York, United States

    2 h-index

    6 publications

    1.1K citations

  3. Cornell University

    Ithaca, United States

    2 h-index

    6 publications

    156 citations

  4. Icahn School of Medicine at Mount Sinai

    New York, United States

    2 h-index

    5 publications

    116 citations

  5. Bristol-Myers Squibb (United States)

    New York, United States

    2 h-index

    5 publications

    162 citations

  6. Virginia Commonwealth University

    Richmond, United States

    2 h-index

    2 publications

    42 citations

  7. Stanford University

    Stanford, United States

    2 h-index

    7 publications

    548 citations

  8. Columbia University

    New York, United States

    2 h-index

    5 publications

    1.6K citations

1–8 of 59

Venues

  1. Proteins Structure Function and Bioinformatics

    6 publications · 403 citations

    6

    h-index

  2. Protein Engineering Design and Selection

    PEDS · 6 publications · 419 citations

    6

    h-index

  3. Nucleic Acids Research

    5 publications · 1.3K citations

    5

    h-index

  4. Proceedings of the National Academy of Sciences

    PNAS · 3 publications · 636 citations

    3

    h-index

  5. Journal of Computer-Aided Molecular Design

    2 publications · 40 citations

    2

    h-index

1–5