A human gut microbial gene catalogue established by metagenomic sequencing

Junjie Qin, Ruiqiang Li, Jeroen Raes, +49

Nature

A metagenome-wide association study of gut microbiota in type 2 diabetes

Junjie Qin, Yingrui Li, Zhiming Cai, +53

Nature

DysbiosisMicrobiotaDiabetesGut MicrobiologyType 2 +9

De novo assembly of human genomes with massively parallel short read sequencing

Ruiqiang Li, Hongmei Zhu, Jue Ruan, +11

Genome Research

Large GenomesEngineeringGeneticsMolecular BiologyGenomics +16

SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data

Yuxin Chen, Yongsheng Chen, Chunmei Shi, +12

GigaScience

The oyster genome reveals stress adaptation and complexity of shell formation

Guofan Zhang, Xiaodong Fang, Ximing Guo, +82

Nature

Environmental StressGeneticsGenomic MechanismMolecular GeneticsGenomics +15

An integrated catalog of reference genes in the human gut microbiome

Junhua Li, Huijue Jia, Xianghang Cai, +34

Nature Biotechnology

DysbiosisFunctional GenomicsIntegrated CatalogMedicineGenetics +11

Whole-genome analyses resolve early branches in the tree of life of modern birds

Erich D. Jarvis, Siavash Mirarab, Andre J. Aberer, +101

Science

Comparative GenomicsGeneticsGenomicsPhylogenetic AnalysisPhylogenetics +19

Gut microbiome development along the colorectal adenoma–carcinoma sequence

Qiang Feng, Suisha Liang, Huijue Jia, +23

Nature Communications

ProbioticDysbiosisGut MicrobiologyGastroenterologyColorectal Cancer +11

Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention

Ruixin Liu, Jie Hong, Xiaoqiang Xu, +44

Nature Medicine

NutritionDysbiosisObesityMetabolic SyndromeProbiotic +14

The genome of the cucumber, Cucumis sativus L.

Sanwen Huang, Ruiqiang Li, Zhonghua Zhang, +93

Nature Genetics

BiologyGeneticsMolecular GeneticsGenetic VariationGenome Sequencing +4