A compendium of RNA-binding motifs for decoding gene regulation

Debashish Ray, Hilal Kazan, Kate B. Cook, +32

Nature

Sequence MotifNatural SciencesRna Binding ProteinsRna BiologyMolecular Biology +5

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

Debashish Ray, Hilal Kazan, Esther T. Chan, +6

Nature Biotechnology

Functional GenomicsEngineeringMedicineGeneticsRna Binding Proteins +11

Structure and Function of Flavivirus NS5 Methyltransferase

Yangsheng Zhou, Debashish Ray, Yiwei Zhao, +7

Journal of Virology

West Nile Virus 5′-Cap Structure Is Formed by Sequential Guanine N-7 and Ribose 2′-O Methylations by Nonstructural Protein 5

Debashish Ray, Aaloki Shah, Mark Tilgner, +7

Journal of Virology

Viral ReplicationViral Polymerase StructureGeneticsMolecular BiologyViral Structural Protein +16

RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins

Hilal Kazan, Debashish Ray, Esther T. Chan, +2

PLoS Computational Biology

Structural BioinformaticsGeneticsMolecular BiologyRna-binding ProteinsMetazoan Genomes +18

Multilayered Control of Alternative Splicing Regulatory Networks by Transcription Factors

Hong Han, Ulrich Braunschweig, Thomas Gonatopoulos-Pournatzis, +20

Molecular Cell

Rna ProcessingTranscriptional RegulationSystems BiologyMultilayered ControlNatural Sciences +10

Oncogenic Activation of the RNA Binding Protein NELFE and MYC Signaling in Hepatocellular Carcinoma

Hien Dang, Atsushi Takai, Marshonna Forgues, +8

Cancer Cell

Oncogenic ActivationOncogenic AgentPathologyMyc SignalingLiver Cancer +4

Cross-Regulation between an Alternative Splicing Activator and a Transcription Repressor Controls Neurogenesis

Bushra Raj, Dave O’Hanlon, John P. Vessey, +5

Molecular Cell

Transcriptional RegulationDevelopmental BiologyGeneticsRna SplicingGene Regulation +6

Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes

Ylva Ivarsson, Roland Arnold, M. A. McLaughlin, +10

Proceedings of the National Academy of Sciences

Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays

Mark B. Stead, Sarah Marshburn, Bijoy K. Mohanty, +6

Nucleic Acids Research

Rnase ERnase IiiSystems BiologyFunctional GenomicsNatural Sciences +12