Human gut microbiome viewed across age and geography

Tanya Yatsunenko, Federico E. Rey, Mark Manary, +18

Nature

DysbiosisGlobal HealthMicrobiotaGut MicrobiologyGut-organ Axis +8

Defining seasonal marine microbial community dynamics

Jack A. Gilbert, Joshua A. Steele, J. Gregory Caporaso, +10

The ISME Journal

A comprehensive transcriptional portrait of human cancer cell lines

Christiaan Klijn, Steffen Durinck, Eric Stawiski, +27

Nature Biotechnology

Tumor BiologyMedicineCancer GenomicsComprehensive Transcriptional PortraitSystems Biology +4

GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality

Thomas D. Wu, Jens Reeder, Michael Lawrence, +2

Methods in molecular biology

Genomic Sequence AlignmentNext-generation SequencingGeneticsSequence AnalysisGenomics +7

Spectrum of diverse genomic alterations define non–clear cell renal carcinoma subtypes

Steffen Durinck, Eric Stawiski, Andrea Pavía-Jiménez, +38

Nature Genetics

UrologyDiverse Genomic AlterationsGenitourinary CancerTumor HeterogeneityMedicine +5

Reshaping the gut microbiome with bacterial transplantation and antibiotic intake

Chaysavanh Manichanh, Jens Reeder, Prudence Gibert, +6

Genome Research

BiologyMicrobiota StructureMicrobiota FunctionDysbiosisGut Physiology +13

RNAshapes: an integrated RNA analysis package based on abstract shapes

Steffen Peter, Björn Voß, Marc Rehmsmeier, +2

Bioinformatics

Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics

Jens Reeder, Robert Giegerich

BMC Bioinformatics

Recurrent Loss of NFE2L2 Exon 2 Is a Mechanism for Nrf2 Pathway Activation in Human Cancers

Leonard D. Goldstein, James Lee, Florian Gnad, +12

Cell Reports

Analysis of protein-altering variants in telomerase genes and their association with MUC5B common variant status in patients with idiopathic pulmonary fibrosis: a candidate gene sequencing study

Amy Dressen, Alexander R. Abbas, Christopher R. Cabanski, +20

The Lancet Respiratory Medicine

Advanced Lung DiseaseTelomerase GenesMedicineGeneticsProtein-altering Variants +7