Predicting Anatomical Therapeutic Chemical (ATC) Classification of Drugs by Integrating Chemical-Chemical Interactions and Similarities

Lei Chen, Weiming Zeng, Yu‐Dong Cai, +2

PLoS ONE

Using LogitBoost classifier to predict protein structural classes

Yu‐Dong Cai, Kaiyan Feng, Wencong Lu, +1

Journal of Theoretical Biology

Systems BiologyEngineeringComputational BiologyProtein ModelingProtein Structure Prediction +4

Analysis and Prediction of the Metabolic Stability of Proteins Based on Their Sequential Features, Subcellular Locations and Interaction Networks

Tao Huang, Xiaohe Shi, Ping Wang, +7

PLoS ONE

EngineeringMolecular BiologyInteraction NetworksMetabolic ModelMetabolic Network +17

Boosting classifier for predicting protein domain structural class

Kaiyan Feng, Yu‐Dong Cai, Kuo‐Chen Chou

Biochemical and Biophysical Research Communications

Computational BiologyKnowledge DiscoveryMolecular BiologyProtein ModelingProtein Structure Prediction +4

Prediction of Protein-Protein Interaction Sites by Random Forest Algorithm with mRMR and IFS

Biqing Li, Kaiyan Feng, Lei Chen, +2

PLoS ONE

Structural BioinformaticsBiomolecular Structure PredictionFeature AnalysisMolecular BiologyProtein Folding +19

Prediction of Protein Domain with mRMR Feature Selection and Analysis

Biqing Li, Le‐Le Hu, Lei Chen, +3

PLoS ONE

Prediction of Pharmacological and Xenobiotic Responses to Drugs Based on Time Course Gene Expression Profiles

Tao Huang, Weiren Cui, Le‐Le Hu, +3

PLoS ONE

EngineeringDrug ResistanceBiostatisticsPharmacogenomicsMicroarray Data Analysis +14

Extracting important information from Chinese Operation Notes with natural language processing methods

Hui Wang, Weide Zhang, Qiang Zeng, +3

Journal of Biomedical Informatics

Natural Language ProcessingChinese Operation NotesInformation RetrievalEngineeringComputational Linguistics +10

Prediction of Deleterious Non-Synonymous SNPs Based on Protein Interaction Network and Hybrid Properties

Tao Huang, Ping Wang, Zhiqiang Ye, +11

PLoS ONE

Protein Interaction NetworkEngineeringGeneticsGenetic EpidemiologyMolecular Biology +21

Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition

Lei Chen, Kaiyan Feng, Yu‐Dong Cai, +2

BMC Bioinformatics