Curated genome annotation of<i>Oryza sativa</i>ssp.<i>japonica</i>and comparative genome analysis with<i>Arabidopsis thaliana</i>

Takeshi Itoh, Tsuyoshi Tanaka, Roberto A. Barrero, +92

Genome Research

BiologyBioinformaticsPlant GeneticsJaponica Cultivar NipponbareComplete Genome +10

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information

Hajime Ohyanagi

Nucleic Acids Research

Plant GeneticsEngineeringGeneticsPlant PathologyGenomics +16

Rice germline‐specific <scp>A</scp>rgonaute <scp>MEL</scp>1 protein binds to phasi<scp>RNA</scp>s generated from more than 700 linc<scp>RNA</scp>s

Reina Komiya, Hajime Ohyanagi, Mitsuru Niihama, +4

The Plant Journal

Most PhasirnasEngineeringGeneticsMolecular GeneticsPlant Genomics +16

RiceFREND: a platform for retrieving coexpressed gene networks in rice

Yutaka Sato, Nobukazu Namiki, Hinako Takehisa, +8

Nucleic Acids Research

Plant GeneticsEngineeringGeneticsGenomicsGene Recognition +19

KAIKObase: An integrated silkworm genome database and data mining tool

Michihiko Shimomura, Hiroshi Minami, Yoshitaka Suetsugu, +12

BMC Genomics

An alternative, zeaxanthin epoxidase-independent abscisic acid biosynthetic pathway in plants

Kun‐Peng Jia, Jianing Mi, Shawkat Ali, +11

Molecular Plant

The evolutionary emergence of cell type-specific genes inferred from the gene expression analysis of <i>Hydra</i>

Jung Shan Hwang, Hajime Ohyanagi, Shiho Hayakawa, +6

Proceedings of the National Academy of Sciences

GeneticsGene CharacterizationMolecular GeneticsGene Regulatory NetworkGenomics +19

RiTE database: a resource database for genus-wide rice genomics and evolutionary biology

Dario Copetti, Jianwei Zhang, Moaïne El Baidouri, +21

BMC Genomics

TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes

Philippe Leroy, Nicolas Guilhot, Hiroaki Sakai, +21

Frontiers in Plant Science

Plant GeneticsGeneticsTriannot PipelineComplex GenomesGenomics +17

DDBJ Read Annotation Pipeline: A Cloud Computing-Based Pipeline for High-Throughput Analysis of Next-Generation Sequencing Data

Hideaki Nagasaki, Takako Mochizuki, Yuichi Kodama, +9

DNA Research

Cloud Computing-based PipelineEngineeringGeneticsHigh-throughput AnnotationGenomics +19