Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data

Jake Jervis-Bardy, Lex E. X. Leong, Shashikanth Marri, +8

Microbiome

Metagenomic comparison of microbial communities inhabiting confined and unconfined aquifer ecosystems

Renee J. Smith, Thomas C. Jeffries, Ben Roudnew, +6

Environmental Microbiology

The microbiome of otitis media with effusion in Indigenous Australian children

Jake Jervis-Bardy, Geraint B. Rogers, Peter S Morris, +10

International Journal of Pediatric Otorhinolaryngology

AllergyPediatric OtolaryngologyOtolaryngologyOtorhinolaryngologyOral Microbiology +8

Random Whole Metagenomic Sequencing for Forensic Discrimination of Soils

Anastasia S. Khodakova, Renee J. Smith, L.A. Burgoyne, +2

PLoS ONE

Functional GenomicsForensic DiscriminationMolecular EcologyNext-generation SequencingGenetics +11

Stygofauna enhance prokaryotic transport in groundwater ecosystems

Renee J. Smith, James Paterson, Elise Launer, +5

Scientific Reports

Host‐specific associations affect the microbiome of <i>Philornis downsi</i>, an introduced parasite to the Galápagos Islands

Michael Ben‐Yosef, Doron Shalom Yishai Zaada, Rachael Y. Dudaniec, +9

Molecular Ecology

Parasitic DiseaseDysbiosisHost-microbe InteractionsHost‐specific AssociationsParasitic Organisms +22

Bacterial and Virus‐Like Particle Abundances in Purged and Unpurged Groundwater Depth Profiles

Ben Roudnew, Justin R. Seymour, Thomas C. Jeffries, +3

Groundwater Monitoring & Remediation

Groundwater QualityHydrogeologyEngineeringEnvironmental EngineeringAquifer Water +12

Substrate Type Determines Metagenomic Profiles from Diverse Chemical Habitats

Thomas C. Jeffries, Justin R. Seymour, Jack A. Gilbert, +7

PLoS ONE

BiologyMicrobial DiversityMolecular EcologyDiverse Chemical HabitatsWater Metagenomes +10

A polyphasic approach for assessing the suitability of bioremediation for the treatment of hydrocarbon-impacted soil

Eric M. Adetutu, Renee J. Smith, John Weber, +4

The Science of The Total Environment

Hydrocarbon-impacted SoilEngineeringEnvironmental EngineeringPolyphasic ApproachBioremediation +5

Confined aquifers as viral reservoirs

Renee J. Smith, Thomas C. Jeffries, Ben Roudnew, +7

Environmental Microbiology Reports

HydrogeologySouth AustraliaConfined GroundwaterConfined AquifersEmergent Virus +9