Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction

Jennifer G. Abelin, Derin B. Keskin, Siranush Sarkizova, +12

Immunity

HistocompatibilityHlaSystems BiologyAutoimmune DiseaseHuman Leukocyte Antigen +12

A large peptidome dataset improves HLA class I epitope prediction across most of the human population

Siranush Sarkizova, Susan Klaeger, Phuong M. Le, +22

Nature Biotechnology

HlaHistocompatibilityImmunogeneticsAutoimmune DiseaseHuman Leukocyte Antigen +12

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research

Honghuang Lin, Guang Lan Zhang, Songsak Tongchusak, +2

BMC Bioinformatics

Conservation and Variability of Dengue Virus Proteins: Implications for Vaccine Design

Asif M. Khan, Olivo Miotto, Eduardo J. M. Nascimento, +8

PLoS neglected tropical diseases

TANTIGEN: a comprehensive database of tumor T cell antigens

Lars Rønn Olsen, Songsak Tongchusak, Honghuang Lin, +3

Cancer Immunology Immunotherapy

Cancer ImmunosurveillanceT-regulatory CellImmunologyTumor ImmunityPathology +5

MULTIPRED2: A computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles

Guang Lan Zhang, David S. DeLuca, Derin B. Keskin, +5

Journal of Immunological Methods

GeneticsMolecular BiologyComputational SystemProteomicsHuman Leukocyte Antigen +14

Mutated <i>BCR-ABL</i> Generates Immunogenic T-cell Epitopes in CML Patients

Ann Cai, Derin B. Keskin, David S. DeLuca, +10

Clinical Cancer Research

Physical detection of influenza A epitopes identifies a stealth subset on human lung epithelium evading natural CD8 immunity

Derin B. Keskin, Bruce B. Reinhold, Guang Lan Zhang, +3

Proceedings of the National Academy of Sciences

Transcriptionally Abundant Major Histocompatibility Complex Class I Alleles Are Fundamental to Nonhuman Primate Simian Immunodeficiency Virus-Specific CD8⁺T Cell Responses

Melisa L. Budde, Jennifer J. Lhost, Benjamin J. Burwitz, +10

Journal of Virology

HistocompatibilityAdaptive Immune SystemGeneticsImmunodeficienciesImmunology +18

AllerTool: a web server for predicting allergenicity and allergic cross-reactivity in proteins

Zong Hong Zhang, Judice L.Y. Koh, Guang Lan Zhang, +3

Bioinformatics