Spliced Leader Trapping Reveals Widespread Alternative Splicing Patterns in the Highly Dynamic Transcriptome of Trypanosoma brucei

Daniel Nilsson, Kapila Gunasekera, Jan Mani, +5

PLoS Pathogens

GeneticsRna SplicingMolecular BiologyMolecular GeneticsGenomics +18

Massive production of small RNAs from a non-coding region of Cauliflower mosaic virus in plant defense and viral counter-defense

Todd Blevins, Rajendran Rajeswaran, Michael Aregger, +7

Nucleic Acids Research

EngineeringGeneticsPlant PathologyPlant VirologyPlant-pathogen Interaction +17

Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments

Béatrice Lecroq, Franck Lejzerowicz, Dipankar Bachar, +6

Proceedings of the National Academy of Sciences

EngineeringOceanographyGenomicsDna BarcodingHigh Throughput Sequencing +19

Analysis of the Elodea nuttallii Transcriptome in Response to Mercury and Cadmium Pollution: Development of Sensitive Tools for Rapid Ecotoxicological Testing

Nicole Regier, Loic Bærlocher, Martin Münsterkötter, +2

Environmental Science & Technology

GeneticsMetal ContaminationGene Expression PatternBioaccumulationGenomics +17

MISIS-2: A bioinformatics tool for in-depth analysis of small RNAs and representation of consensus master genome in viral quasispecies

Jonathan Séguin, Patricia Otten, Loic Bærlocher, +2

Journal of Virological Methods

BioinformaticsViral EvolutionEngineeringBioinformatics ToolViral Quasispecies +13

MISIS: A bioinformatics tool to view and analyze maps of small RNAs derived from viruses and genomic loci generating multiple small RNAs

Jonathan Séguin, Patricia Otten, Loic Bærlocher, +2

Journal of Virological Methods

Analyze MapsFunctional GenomicsBioinformatics ToolGeneticsSequence Analysis +9

Single-molecule DNA-mapping and whole-genome sequencing of individual cells

Rodolphe Marie, Jonas N. Pedersen, Loic Bærlocher, +11

Proceedings of the National Academy of Sciences

Sequencing of human genomes extracted from single cancer cells isolated in a valveless microfluidic device

Rodolphe Marie, Marie Pødenphant, Kamila Koprowska, +16

Lab on a Chip

Microbial Communities of Conducting and Respiratory Zones of Lung-Transplanted Patients

Marie Beaume, Vladimir Lazarević, Thilo Köhler, +8

Frontiers in Microbiology