SEdb 2.0: a comprehensive super-enhancer database of human and mouse

Yuezhu Wang, Chao Song, Jun Zhao, +14

Nucleic Acids Research

Epigenetic ChangeGeneticsMolecular BiologySpatial OmicsEpigenetics +23

Melatonin Improves Cotton Salt Tolerance by Regulating ROS Scavenging System and Ca2 + Signal Transduction

Yuexin Zhang, Yapeng Fan, Cun Rui, +14

Frontiers in Plant Science

Cotton transcriptome analysis reveals novel biological pathways that eliminate reactive oxygen species (ROS) under sodium bicarbonate (NaHCO3) alkaline stress

Yapeng Fan, Xuke Lu, Xiugui Chen, +12

Genomics

TRAPT: a multi-stage fused deep learning framework for predicting transcriptional regulators based on large-scale epigenomic data

Guorui Zhang, Chao Song, Mingxue Yin, +6

Nature Communications

Large-scale Epigenomic DataEngineeringGeneticsMultiomicsGene Regulatory Network +18

Different Transcriptional Response to Xanthomonas citri subsp. citri between Kumquat and Sweet Orange with Contrasting Canker Tolerance

Xing-Zheng Fu, Xiaoqing Gong, Yuexin Zhang, +2

PLoS ONE

Plant Defense GeneGeneticsMolecular BiologyPlant PathologyMolecular Genetics +18

Characterization of super‐enhancer‐associated functional lncRNAs acting as ceRNAs in ESCC

Qiu‐Yu Wang, Peng Liu, Yang Chen, +11

Molecular Oncology

Super‐enhancer‐associated Functional LncrnasEngineeringMolecular BiologyCancer BiologyTumor Biology +14

Combined transcriptomic and metabolomic analyses elucidate key salt-responsive biomarkers to regulate salt tolerance in cotton

Mingge Han, Ruifeng Cui, Delong Wang, +22

BMC Plant Biology

Genome-wide analysis of the SBT gene family involved in drought tolerance in cotton

Maohua Dai, Na Zhou, Yue Zhang, +6

Frontiers in Plant Science

Plant PhysiologyPlant GeneticsBotanyGeneticsMolecular Biology +15

eRNAbase: a comprehensive database for decoding the regulatory eRNAs in human and mouse

Chao Song, Guorui Zhang, Xinxin Mu, +8

Nucleic Acids Research

Identification of SNAT Family Genes Suggests GhSNAT3D Functional Reponse to Melatonin Synthesis Under Salinity Stress in Cotton

Yuexin Zhang, Cun Rui, Yapeng Fan, +16

Frontiers in Molecular Biosciences