Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Peter Ebert, Peter A. Audano, Qihui Zhu, +62

Science

Structural VariationGeneticsMolecular BiologyGenomicsHuman Phenotypes +15

Accurate long-read de novo assembly evaluation with Inspector

Yu Chen, Yixin Zhang, Amy Wang, +2

Genome biology

Long-read SequencingFunctional GenomicsAssembly EvaluatorAssembly ErrorsEngineering +13

Pyropia yezoensis genome reveals diverse mechanisms of carbon acquisition in the intertidal environment

Dongmei Wang, Xinzi Yu, Kuipeng Xu, +25

Nature Communications

Whole-genome resequencing reveals signatures of selection and timing of duck domestication

Zebin Zhang, Yaxiong Jia, Pedro Almeida, +14

GigaScience

BERMP: a cross-species classifier for predicting m⁶A sites by integrating a deep learning algorithm and a random forest approach

Yu Huang, Ningning He, Yu Chen, +2

International Journal of Biological Sciences

Improving of Rice Blast Resistances in Japonica by Pyramiding Major R Genes

Ning Xiao, Yunyu Wu, Cunhong Pan, +9

Frontiers in Plant Science

Deciphering the exact breakpoints of structural variations using long sequencing reads with DeBreak

Yu Chen, Amy Wang, Courtney A. Barkley, +5

Nature Communications

Structural VariationsGeneticsMolecular BiologySv CandidatesGenomics +17

Identification of candidate genomic regions for chicken egg number traits based on genome-wide association study

Xiurong Zhao, Changsheng Nie, Jinxin Zhang, +13

BMC Genomics

Gene Fusion Detection and Characterization in Long-Read Cancer Transcriptome Sequencing Data with FusionSeeker

Yu Chen, Yiqing Wang, Weisheng Chen, +4

Cancer Research

SCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data

N. M. Prashant, Nawaf Alomran, Yu Chen, +5

BMC Genomics